| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CFF8240_1314 |
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| Symbol | rpoC |
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| ID | 4537850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter fetus subsp. fetus 82-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008599 |
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| Strand | - |
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| Start bp | 1302048 |
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| End bp | 1306574 |
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| Gene Length | 4527 bp |
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| Protein Length | 1508 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639746682 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_892467 |
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| Protein GI | 118474969 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.192616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAGT TAAAACCTAT TGAGATAAAA GAAGATGCAA AACCAAGGGA TTTTGAAGCC
TTTCAGCTAA GACTCGCTAG TCCAGATCGT ATAAAAGCGT GGAGTCACGG TGAAGTTAAA
AAGCCTGAAA CCATTAATTA TCGCACGTTA AAACCGGAGC GCGACGGTCT ATTTTGTGCT
AAGATATTTG GACCTATAAG GGATTATGAA TGTCTGTGTG GTAAGTATAA AAAGATGCGT
TATAAAGGAA TTAAATGTGA AAAGTGCGGC GTTGAAGTAA CTACTTCGAA GGTTCGTCGC
TCACGCATGG GGCACATTGA GCTTGTTACT CCTGTAGCAC ATATTTGGTA TGTAAATTCG
CTTCCTAGTC GTATAGGCAC TCTTCTTGGC ATAAAAATGA AGGATTTAGA ACGTGTTCTT
TACTATGAAG CTTATATAGT AGAAAATCCG GGCGATGCAT TTTATGACAA TGAAAATAGT
AAAAAAGTAG ATCTTTATGA TGTTTTAAAT GAAGAGCAGT ACGTATTACT TGAGCAGAAA
TTTAGTGAAA GTGGTTTTAA AGCTAGAATG GGCGGCGAAG TTATACGTGA TCTACTCGCA
AGTTTAGATT TAGTATCTAT ACTTGATCAG TTAAAGATCG AGATAGAAAG TACAAATAGC
GAAGCAAAGA AAAAAACTAT AGTAAAACGT TTAAAAGTTG TTGAGAGTTT TTTAAATTCA
GGTAATCGTC CTGAATGGAT GATGATAACA AACTTGCCTG TTTTACCACC TGATTTAAGA
CCTCTTGTCA GTCTTGATGG TGGTAAATTT GCAGTTTCAG ATGTAAATGA TCTGTATCGT
AGAGTTATAA ATAGAAATAC TCGTTTAAAA AGACTAATGG AACTTGACGC GCCAGAAATT
ATTATTCGTA ATGAAAAAAG AATGCTTCAA GAAGCAGTTG ATGCTCTGTT TGATAATGGT
AGGCGTGCAA ATGCAGTAAA AGGTGCAAAT AAAAGACCGT TAAAATCTCT AAGTGAAATT
ATAAAAGGTA AACAGGGTCG TTTCCGTCAA AATCTGCTTG GTAAACGTGT GGATTTTTCA
GGACGTTCAG TTATAGTTGT AGGGCCAAAG CTTAGAATGG ATCAATGTGG GCTTCCTAAA
AAAATGGCAC TTGAGCTATT TAAACCTCAT TTGTTGGCTC GCCTTGAAGA AAAGGGATAT
GCTACTACTG TTAAACAAGC TAAAAAGATG ATCGAAGATA AAACAAATGA AGTTTGGGAG
TGCCTTGAAG AGGTAGTTGC AGATCATCCC GTTATGTTAA ACCGTGCTCC TACTTTACAT
AAAATGTCTA TTCAGGCGTT TCATCCGGTT TTAATAGAAG GTAAAGCTAT TCAGCTTCAT
CCTCTTGTTT GTTCGGCGTT CAATGCAGAC TTTGATGGCG ACCAAATGGC TGTGCATGTA
CCACTTTCTC AAGAGGCTAT TGCAGAGTGT AAAATTCTTA TGTTAAGTTC GATGAATATC
TTACTTCCTG CGAGCGGAAA AGCTGTAACG GTACCTTCTC AAGATATGGT TTTGGGAATT
TATTATTTAA GTCTTGAAAA AAATGAAGCC GTTGGAGCTA ATAAAATTTT TGCTAGTGTC
GATGAGGTAA TGATAGCTGT TGAAGCTCAC TATCTTGACT TGCACGCAAA GATAAAAACT
ATGGTAGAAG GACGCACTGT ATTTACAACT GCGGGTCGTC TTATTATAAA ATCAATACTG
CCAAATTTAA AAGAAAACTC TGTTCCAGAA TCTATGTGGA ATAAAGTTAT GAAGAAAAAG
GATATTGCTA ATTTGGTTGA TTATGTTTAT AAAAATGGCG GTCTTGAAGT AACAGCCGGG
TTTTTAGATA AGCTTAAAAA TCTAGGATTT AGATACGCTA CAAAAGCAGG GATAAGTATA
TCTATAGCTG ATATTATCAT ACCTGAGAGT AAATATAGTT ATGTAGATGA AGCAAAGAAA
AGAGTTAGAG AAATTCAAAA TCAATACGGC TCAGGTTTAC TAACTGATTC AGAAAGATAC
AACAAAATAG TTGATATCTG GACAGATACT AACAATAAAG TTGCAGCTGA AATGATGAAA
CTTATCAAAA CAGATAAAAG TGGATTTAAC TCTATTTATA TGATGGCAGA CTCGGGAGCA
AGGGGAAGTG CAGCTCAAAT TCGTCAGCTT GCTGGTATGC GTGGACTTAT GGCAAAACCT
GATGGTTCGA TCATTGAGAC TCCTATCACA TCAAATTTCC GTGAGGGACT AAACGTGCTC
GAGTATTTCA TCTCAACTCA CGGTGCTAGA AAAGGTCTTG CAGATACTGC ACTTAAAACC
GCAAATGCCG GATATCTTAC AAGAAAGCTT ATCGATGTTG CTCAAAACGT AAAAGTTACT
ATGGATGATT GCGGTACTCA CGAAGGTGTT GAGATAACAG AGATTACTGA AAACGGAGAG
CTTATCGAAA GCTTAGAAGA AAGAGTATTA GGTAGAGTTT TAAGTGATGA CGTAATTGAT
CCTATTACTA ATGAAATCTT ATTTACCGAA GGTACTCTTA TAGATGAAGT AAAAGCTAGA
ACTATCACTG ACGCTGGTAT AAAATCAGTA AGCATAAGAA CTCCTATAAC TTGTAAAGCA
AGTAAGGGCG TATGCTCAAA ATGTTATGGT ATAAACCTTG GCGAGGGTAA ACTGGTAAAA
CCAGGAGAGG CCGTGGGCAT CATCTCAGCT CAATCAATCG GCGAACCTGG TACTCAGCTT
ACTCTAAGAA CATTCCACAT TGGCGGTACT GCTTCAACGG AGCAACAAGA TCGTCAAGTA
GTGGCTCAAA AAGAGGGATT TATTAGATAT TATAATCTTA AAACATATGA GAATAACAAT
AAATTTATAG TAACAAATCG TCGTAATGCA GCTATATTAT TAGTTGAGCC GAAGATAAAA
GCTCCGTTTG ACGGAGAGAT AAATATAGAA GTGGCACACG AAGATATAAA TGTTATTATA
AAAGGCAAAA GCGATGAGGT TAAGTATGTT TTAAGAAAAC ACGATTTAGC CAAACCGAAT
GAGTTAGCCG GAGTAAGCGG TAAAGTTGAA GGTAAGTTCT ACATACCTTA TATAAAAGGT
GATAAAGTCA AGGAAAACGA GAGTATAGTC GAGGTTATAA AAGAGGGTTG GAATGTGCCA
AACCGTATTC CTTTTGCTAG TGAAGTAAAA GTAGCTGATG GCGATCCTGT TACTCAAGAT
ATATTATCTG GAGCAAACGG CGTACTTAAG TTTTATATAT TAAAAGGCGA CTATCTAGAG
AGAATTAAAA ACGTCAAAAA AGGCGATATG GTTAGCGAAA AAGGATTATT TGTTGTTATC
GCCGATGATG ACGATAGAGA AGCTGTTCGT CACTATATAC CAAGAAATAG CGTTATTAAA
TTTAATGATA GCGATATAGT AAGCGCAAAA GATACTATAG CAAAACCGCA AGATGGCAGT
AAACTTGTAA TTGCCGAGTG GGATCCGTAC TCAACTCCTG TTATAGCAGA AGAAGCCGGT
ACAGTCGCTT ATGAAGATAT AGAGCCTGGA TATAGCGTAG CCGAGCAGTA TGATGAAGCA
ACCGGAGAAA GTAGGCTTGT TATAAACGAA TATCTACCAA GCGGAGTTAA GCCAACTATA
GTTATATCAA CTAAAAGCGG AAAACTTATT CGTTATCAGT TGGAGCCTAA GACTGCTATA
TTTGTAAAAG ATGGAGCAGA GGTTTCTAGA GCCGATACTA TAGCTAAAAC TCCAAAAGCA
GTTGCAAAAT CAAAAGATAT CACAGGAGGT CTTCCTAGGG TTTCAGAATT GTTTGAAGCA
AGGCGTCCTA AAAATACAGC TATTATTGCA GAGATTGATG GTACTATCAA ATTTGATAAA
CCTCTTCGCT CAAAAGAACG TATAATAATA ATGGCTGAAG ATGGCTCAAG CGCAGAGTAT
CTTATAGATA AATCTCGCCA AATTCAAGTA AGAGATGGTG AGTTTGTGCA TGCTGGAGAA
AAATTAACCG ACGGTTTAGT TAGCAGCCAT GACGTATTAA GGATATTAGG TGAAAAAGCA
TTGCACTATT ACTTGATAAG TGAAATTCAA CAAGTTTATC GCTCACAAGG CGTTGCTATA
AGTGATAAAC ATATAGAGAT TATCGTATCT CAAATGCTGC GTCAAGTAAA AATAGTAGAT
AGCGGTCACA CAAATTTTAT CGTAGGCGAT ATGGTAAGTA GACGTAAATT TAGAGAAGAA
AATGATCGTA TAATGAAAAT AGGTGGCGAG CCAGCAATTG CCGAGCCAGT ACTTCTTGGT
GTAACAAGAG CTGCTATAGG AAGCGATAGT GTTATCTCAG CAGCTTCTTT CCAAGAGACT
ACAAAGGTTT TAACAGAAGC AAGTATCGCT GCTAAATTCG ACTATCTTGA AGATCTAAAA
GAGAACGTTA TTTTAGGTCG TATGATACCA GTTGGTACCG GTCTTTATCA AGATAAAAAA
GTTAAGATTA AAATAAACGA AGATTAA
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| Protein sequence | MSELKPIEIK EDAKPRDFEA FQLRLASPDR IKAWSHGEVK KPETINYRTL KPERDGLFCA
KIFGPIRDYE CLCGKYKKMR YKGIKCEKCG VEVTTSKVRR SRMGHIELVT PVAHIWYVNS
LPSRIGTLLG IKMKDLERVL YYEAYIVENP GDAFYDNENS KKVDLYDVLN EEQYVLLEQK
FSESGFKARM GGEVIRDLLA SLDLVSILDQ LKIEIESTNS EAKKKTIVKR LKVVESFLNS
GNRPEWMMIT NLPVLPPDLR PLVSLDGGKF AVSDVNDLYR RVINRNTRLK RLMELDAPEI
IIRNEKRMLQ EAVDALFDNG RRANAVKGAN KRPLKSLSEI IKGKQGRFRQ NLLGKRVDFS
GRSVIVVGPK LRMDQCGLPK KMALELFKPH LLARLEEKGY ATTVKQAKKM IEDKTNEVWE
CLEEVVADHP VMLNRAPTLH KMSIQAFHPV LIEGKAIQLH PLVCSAFNAD FDGDQMAVHV
PLSQEAIAEC KILMLSSMNI LLPASGKAVT VPSQDMVLGI YYLSLEKNEA VGANKIFASV
DEVMIAVEAH YLDLHAKIKT MVEGRTVFTT AGRLIIKSIL PNLKENSVPE SMWNKVMKKK
DIANLVDYVY KNGGLEVTAG FLDKLKNLGF RYATKAGISI SIADIIIPES KYSYVDEAKK
RVREIQNQYG SGLLTDSERY NKIVDIWTDT NNKVAAEMMK LIKTDKSGFN SIYMMADSGA
RGSAAQIRQL AGMRGLMAKP DGSIIETPIT SNFREGLNVL EYFISTHGAR KGLADTALKT
ANAGYLTRKL IDVAQNVKVT MDDCGTHEGV EITEITENGE LIESLEERVL GRVLSDDVID
PITNEILFTE GTLIDEVKAR TITDAGIKSV SIRTPITCKA SKGVCSKCYG INLGEGKLVK
PGEAVGIISA QSIGEPGTQL TLRTFHIGGT ASTEQQDRQV VAQKEGFIRY YNLKTYENNN
KFIVTNRRNA AILLVEPKIK APFDGEINIE VAHEDINVII KGKSDEVKYV LRKHDLAKPN
ELAGVSGKVE GKFYIPYIKG DKVKENESIV EVIKEGWNVP NRIPFASEVK VADGDPVTQD
ILSGANGVLK FYILKGDYLE RIKNVKKGDM VSEKGLFVVI ADDDDREAVR HYIPRNSVIK
FNDSDIVSAK DTIAKPQDGS KLVIAEWDPY STPVIAEEAG TVAYEDIEPG YSVAEQYDEA
TGESRLVINE YLPSGVKPTI VISTKSGKLI RYQLEPKTAI FVKDGAEVSR ADTIAKTPKA
VAKSKDITGG LPRVSELFEA RRPKNTAIIA EIDGTIKFDK PLRSKERIII MAEDGSSAEY
LIDKSRQIQV RDGEFVHAGE KLTDGLVSSH DVLRILGEKA LHYYLISEIQ QVYRSQGVAI
SDKHIEIIVS QMLRQVKIVD SGHTNFIVGD MVSRRKFREE NDRIMKIGGE PAIAEPVLLG
VTRAAIGSDS VISAASFQET TKVLTEASIA AKFDYLEDLK ENVILGRMIP VGTGLYQDKK
VKIKINED
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