Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CCV52592_1565 |
Symbol | ligA |
ID | 5406507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter curvus 525.92 |
Kingdom | Bacteria |
Replicon accession | NC_009715 |
Strand | + |
Start bp | 736921 |
End bp | 738885 |
Gene Length | 1965 bp |
Protein Length | 654 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640872184 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_001408016 |
Protein GI | 154174322 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0182697 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAATT TTATGCGAAT CGATTCAAAA GAGAGCTATG AAAATGCGGT GGCTACGCTA AATGCGTGGG CGAAGGCCTA TTACGACGAC GACGCGCCGA TAGCCAGCGA CGAGGAGTAC GACGCTCTTT ACCACGAGGT CCTGGCCTAC GAGCAGGTAA ATCCCGCCCA AAAATCGCTA TTCTCGCCGA CTACCAGGAT AGGCGGAGGC GTCAGCGAAG GCTTTAGCAA GGCTAGGCAC ATCAAGCAGA TGTGGAGCAT GGAGGATATT TTTAGCCAGT TGGAGCTTGT CGCGTGGCTA AAACGCGGTG AGAAGCAAAA TTTAAGCTTT GTAGCCGAGC CGAAATTTGA CGGAGCGAGC CTAAATTTAC TCTATGAAAA GGGCATGCTG GTAAGGGCCA TAACGCGCGG AGACGGCATC ACGGGCGAAG AGGTCACGCA AAACGCTCGC GTGATAAAGT CTATCCCGCT AAACATCTCT TACGATGGCC GCATCGAGAT CCGCGGCGAG GTCGTCATAA AAAAGGCCGA TTTTGACGCG ATAAACGAGG AGCGCACGCG AAACGGCGAG ACCCTGCTCT CAAACCCTAG AAATGCGGCT GCAGGCAGCT TGCGACAGCT AGATAGCGCC GTGACAGCCA AAAGAAAGCT ACTTTTCATC CCTTGGGGCG TGGGCGAGCA AAATTTAGGG CTTGCCAAGC ATAGCGAAGT GATGAAATTC GTACGCGATC TTGGCTTTTA TAGGGATGAT TTTTTTAAAA TTTTGGACGC CGACGGTCTG GCGGGCGCTT ATAACGAGCT TCTTAAACAG CGCGACGAAA AGGACGTGAT GATGGACGGC ATGGTGATCC GCGTGGACGA TCTGGCGCGC TGCGAGGAGC TGGGCTACAC GGTGAAATTC CCAAAATTTA TGGTCGCGTT TAAATTCCCC GCGATCGAAA AAACCACTAG GCTGCTTGAC GTGGCACTTC AGGTAGGCAG AAGCGGCGTC GTGACGCCTG TTGGCGTGCT TGATGAGGTC GTCATCGACG GAGCGCGCGT GAAATCAGCC ACTTTGCATA ACTTTGACGA GATCGAGCGC CTTGGCGTGA TGAAAAACGA TCTTATAAGC ATCATCCGCT CAGGAGACGT GATACCAAAG ATAACAAGCG TCTTTAAAGA GCGTAGAGAC GGCACGCAAA CGCCAATAAT ACGGCCAAAA TTTTGCCCCG AGTGCGGCTC GCATCTGCTT GACGAGGGCG TTTTCATAAA GTGTCAAAAT CTAAACTGCC GCGCTCGCGT GATAAACTCG ATCATACATT ACGCCTCCAA AAAATGCCTA AACATCGATG GGCTGGGCGA GGCGATCATA AATTTGCTCT ATGAAAAAGG GTTGATATCT CGCGTCATCG ATATATATTC ACTAAAATTT GAGGATCTGA TGGCGCTTGA AGGCTTTAAA GACAAAAAGG CGCAAAACCT GCTTGACGCG ATAGAGGCGA GCAAGGGCGC GAGTCTAGCG CGCTTCATCA CCGGGCTTGG CTGCGAGCAT ATCGGCGAGG TGGCGGCTAA AAAGATCGCG CAAAATTTCG GCGAGGGCTG GCTGGAGGCC GACTTTGACG AGGTAAAAAA TTTAGAGGGT TTTGGCGAGG AGATGGCAAA TAGCTTGATG GATTTTATAG AGGTCAATAA AGATGAAATT TTGGCCCTGC AAAGCATCGT TCGTCCGAGC TTTGAGCGCA AGCAGATCAC GCAAAACGCC TTTAGCGGCA AAAGCGTCGT GATAACGGGC ACGCTAAGCC GACCAAGAGA CGAGATCAAA GCCGAGCTTG AGGGCTACGG CGCAAAGGTA GTAGGCTCGG TCTCTAAAAA AACGGACTTC GTGCTGGCAG GAAGCAACGC CGGAAGCAAG CTGCAAAAAG CCGTGGAGCT TGGCGTTCGC GTGATCGACG AGGGCGAGTT TGAGAGGCTG AAGCTTGAGA TTTGA
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Protein sequence | MENFMRIDSK ESYENAVATL NAWAKAYYDD DAPIASDEEY DALYHEVLAY EQVNPAQKSL FSPTTRIGGG VSEGFSKARH IKQMWSMEDI FSQLELVAWL KRGEKQNLSF VAEPKFDGAS LNLLYEKGML VRAITRGDGI TGEEVTQNAR VIKSIPLNIS YDGRIEIRGE VVIKKADFDA INEERTRNGE TLLSNPRNAA AGSLRQLDSA VTAKRKLLFI PWGVGEQNLG LAKHSEVMKF VRDLGFYRDD FFKILDADGL AGAYNELLKQ RDEKDVMMDG MVIRVDDLAR CEELGYTVKF PKFMVAFKFP AIEKTTRLLD VALQVGRSGV VTPVGVLDEV VIDGARVKSA TLHNFDEIER LGVMKNDLIS IIRSGDVIPK ITSVFKERRD GTQTPIIRPK FCPECGSHLL DEGVFIKCQN LNCRARVINS IIHYASKKCL NIDGLGEAII NLLYEKGLIS RVIDIYSLKF EDLMALEGFK DKKAQNLLDA IEASKGASLA RFITGLGCEH IGEVAAKKIA QNFGEGWLEA DFDEVKNLEG FGEEMANSLM DFIEVNKDEI LALQSIVRPS FERKQITQNA FSGKSVVITG TLSRPRDEIK AELEGYGAKV VGSVSKKTDF VLAGSNAGSK LQKAVELGVR VIDEGEFERL KLEI
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