| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCV52592_0164 |
|---|
| Symbol | |
|---|
| ID | 5406951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter curvus 525.92 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009715 |
|---|
| Strand | - |
|---|
| Start bp | 1404241 |
|---|
| End bp | 1405704 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640872861 |
|---|
| Product | type I secretion membrane fusion protein, HlyD |
|---|
| Protein accession | YP_001408653 |
|---|
| Protein GI | 154174251 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.846875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAG AAAAAAATAC TCAATCAAGT CCTACGAACG AGGATCAGCA GATAAAGCGA
CCAAGCACTC TTGAAGAGCA AGAGCGCGCG AGCACCGATA TCTTTGATGG AGTTAAAGAT
ATCAAGGCCG GCATCCAGGC CAAAGACTAT GACGCATACG ATCTAAAATT TATGTCCAGT
CTCTCTGAAG CCGTGCTCGC GAAAGCACCC TCAACGTCTA AAAAGATATT ATACGCTCTT
AGCTTTACGA TCTTTTGGCT CATCGTTTGG GCTTCGTGGG CGCAGATAGA CGAGATAACA
AGAGGAAGCG GCAAGATAAT CCCGTCAGGG AAAAATCAAG CCATACAAAA CCTCGAAGGC
GGCATTGTAG ATGCGATTTT CGTAAAAGAG GGCGACGAGG TCAAAAAAGA TCAGATCATT
TTAAGGATAG ACAACAAAAA TTTCTCCAGT AGCTACGGAG AGTCTAAGCT CAGGCTTGAC
GAACTGGAAG CGAAATTTAT GCGACTTGAT GCCGAGGCAA ACGATAAAGA ATTCGTCTAT
GACGAAAAGC GCGACGCAAA TAATACCAAA GCTATAAAAT ATGAGATCAG CCTACATAAT
TCAAATTTAG AGCATCTTGA CGAGCAGATA AGAATTCTGA CCGAGCAGAT AACCCAACGC
CAAAGCGAAC TGACCGAGCT TAAAAATAAA ATTTCACAAA CGCAAAACAG CTACAATCTC
ATGCTAAAAG AAAAGGCCAT CATGGAACCG ATCTTTAAAA AAGGGCTCGT AAGCGAGGTC
GAGTATATCC AGCTTCAAAG GCGAGTAAAT GACCTAAAAG GCGAGCTGGA CGCGTCCGTT
TTGGCTCTGC CTCGCGTGGA GTCGACAATA AAAGAGGTGC AAAACAAGAT AGCCGAGGCG
AAGCTCGCGT TTAAAAATAA CGCCAAAAAG GAGCTAAACG AAGTCTCAGC CGAGATCGCT
CGTATCAGTG AGTCGCAGAT CAGCCTTAGC GACAGGGTCG AAAGGACCTA TGTGCGCTCT
CCTGTAAACG GCATAGTCAG TAAAATGATG GTGCATACGA TTTCTGGTGT CATAAAGCCC
GGAGAAAACA TCGCTGAGAT CGTGCCGCTT GAAGACAAGC TCGTAGCTGA GGTAAAGGTC
AAGCCGGCCG ATGTCGCATT TTTGAGGCCG GGGCTTGATA CGATAGTGAA ATTTACGGCT
TATGATTTTA GTATTTATGG TGGACTTAAA GGTAAGGTGA CACAAATCAG CGCTGACACC
GAGACGAACG AGAAGACCGG CGAGAGTTAT TATCTAGTGC GCATCGAGAC GGACAAAAAC
TACCTTGGAA GCGAGGAAAA GCCGCTTCGC ATAAAGGTAG GCATGATCGT TTCTGCGGAT
ATCATTACGG GCAAAAAGAC GATACTTGAT TATCTTCTTA AGCCGATATT AAAAGCCAAA
AACAACGCCT TGACGGAGAG ATGA
|
|---|
| Protein sequence | MQEEKNTQSS PTNEDQQIKR PSTLEEQERA STDIFDGVKD IKAGIQAKDY DAYDLKFMSS
LSEAVLAKAP STSKKILYAL SFTIFWLIVW ASWAQIDEIT RGSGKIIPSG KNQAIQNLEG
GIVDAIFVKE GDEVKKDQII LRIDNKNFSS SYGESKLRLD ELEAKFMRLD AEANDKEFVY
DEKRDANNTK AIKYEISLHN SNLEHLDEQI RILTEQITQR QSELTELKNK ISQTQNSYNL
MLKEKAIMEP IFKKGLVSEV EYIQLQRRVN DLKGELDASV LALPRVESTI KEVQNKIAEA
KLAFKNNAKK ELNEVSAEIA RISESQISLS DRVERTYVRS PVNGIVSKMM VHTISGVIKP
GENIAEIVPL EDKLVAEVKV KPADVAFLRP GLDTIVKFTA YDFSIYGGLK GKVTQISADT
ETNEKTGESY YLVRIETDKN YLGSEEKPLR IKVGMIVSAD IITGKKTILD YLLKPILKAK
NNALTER
|
|---|
| |