Gene CCV52592_0162 details

Gene Information

• Locus tag: CCV52592_0162
• Symbol: nfo
• ID: 5406489
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter curvus 525.92
• Kingdom: Bacteria
• Replicon accession: NC_009715
• Strand: -
• Start bp: 1407849
• End bp: 1409798
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640872863
• Product: endonuclease IV
• Protein accession: YP_001408655
• Protein GI: 154175034
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.963348
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACTAT TTAAACAGAT CATGTTGGCT GTGATAGCTT TTGGTATCGT GATATTCATG 
GCGGTAGGAT ATTTGAATTT TAAAAGCTTA AATAGCTACA TCAACGATCA GCTTGGTGAA 
AATGCCAGGC ATACGGCAAA TTCTTTAGGA CTGGCGCTAA AGCCTATCAT AGATCCCGAC 
GATATGTCGA TGGCTGAAAC GATGATAAAT TCGATGTTTG ACAGCGGTCG CTATCAGCTC 
ATAAAGCTTG AAGACGTAGA CGGGAAAATT TTGATAGAAA GCTCTCAGCC TACCCAAGCT 
ATGGGCGTAC CGGAGTGGTT TTTCAAATTT GCAAAATTTG AAGCGCCTAT CGTTCAAAGC 
GAGATAATGA CCGGCTGGAC GAAATTTGGC ACTCTTTACG TTCAAGGCAG CACCGCGCTT 
GCTTATAACG AGCTTTACTC CAATATAAAA AATATATTTG AATTTCTACT CGCCATGATA 
GCTGTCTCGC TTGTGGTGAG TTATTTCGGG CTAAAGGCGA TATTCAAGCC TTTATTAAAG 
GTGCAAAATC AAGCCGAAGC GATACTTGAT AATAAATTCT TGATCCAAGA AAAGATCCCT 
TTCACGACCG ATCTTAGGCA GATGGTGCTT GCGATGAACT CGATGGTCAA AAAAGTCGAG 
GATATATTTG AAAGAGAGGC CGCTACGCTC AATAAATACC AAGAGCTGCT TTATAAAGAC 
GGCATGAGTG GAGCTTACAA CAGGAGATTT TTCCAGACTA AATTTAGCGA ATACCTTGTA 
AGCGAGGAGT ATTCTCGCGG TGCGATTGTG CTTATAAGCT TTAAAGAGCT TGTAAATTTA 
AAGAAAATTT TAGGCTTTGA GAAATGGCAA AGCTTTATTA TAAAGATCGC TCAAATCTTA 
AAAAGCTGCG TCGACGAGAG CAAATTTAAC GCCGTGATAG CCAGGCTAAA TGACAACGAC 
TTTGCGCTCT TGATGCCGAG TGTAGATCCT CAAAGCGTTA CCGGCCTTAC GGAAAAGATA 
ATGGACGAGA TGAAAAAAAC GTATCAGCAT TTTGCCATCA ACGAAAACGA GTATCCGGCA 
AACGCCGCGA TAGTGGATTA CGAGCCAAAA AGCCAAATAG GCACTTTGCT GACGACAGCT 
GATGTGACAC TGGCAAATGC ACGTTTAGAG GGAAATTTCA CATATAAAAT TTTTAAAGAC 
AGCACGAATG CGCTCATCAT GGGTAAGGAA AAATACCGAG ACCTCATATC AAAATCCATG 
CAAAACGATA TGTTTAAATT CGCCTCTCAA AAGGTCGCCA GCAGCGATGA TAAATTTGAG 
CAATACGAGC TTTACTTGCG TCTTGTGGAC GATGAGGGTA AGTGGCAGAT GGCTTCTTAT 
TTCATGCCGA TGGTAAACGA ACTCGACCTT GGCGCGGCAC TTGATCTGCA TATTTTAAAC 
AGGATAGCTC AAATTTTACC TAGCAAAATT TTACCCGATG GCTCTTTGGC GATAAATTTA 
GGCAAGGAAA TTTTAAATTC CGACGAGAAT TTTTACAAGC TTGAGGCTGT GCTTAAGAAA 
ATAAGCGCTT CGTCTAAATT TAAAAACTAT ATAGAAATTC CAAACAAAGA CGATATTAGC 
TTGCAAAGCG TGATAAAGCT CACGAATAAG CTCAAGGAAT TTGGCTTTGG CTTTGGCTTT 
GATCACTTCG GGCTTGATGC TAAAAGCATA GAGAGGCTAA AGGAGCTAAA TCCTGATTAT 
GTTAAAATTC AAGCCGCAAA CATCATAGAC TTTTTTAGTG AAAACGGCAG TGCACAGACT 
AGGCAGTCGC TTGAGGTCAT CATGAATTCT AAGGACATCA AGCTCGTAGC CATCGGTGTT 
GAAAACGAGG AGCAAAAGAA AAAGCTGCTC GAGCTTGGCA TTATGAATAT GCAAGGAATT 
TATATCGATG AGATCAAAAA TATTGGATGA 

 

Protein sequence

MTLFKQIMLA VIAFGIVIFM AVGYLNFKSL NSYINDQLGE NARHTANSLG LALKPIIDPD 
DMSMAETMIN SMFDSGRYQL IKLEDVDGKI LIESSQPTQA MGVPEWFFKF AKFEAPIVQS 
EIMTGWTKFG TLYVQGSTAL AYNELYSNIK NIFEFLLAMI AVSLVVSYFG LKAIFKPLLK 
VQNQAEAILD NKFLIQEKIP FTTDLRQMVL AMNSMVKKVE DIFEREAATL NKYQELLYKD 
GMSGAYNRRF FQTKFSEYLV SEEYSRGAIV LISFKELVNL KKILGFEKWQ SFIIKIAQIL 
KSCVDESKFN AVIARLNDND FALLMPSVDP QSVTGLTEKI MDEMKKTYQH FAINENEYPA 
NAAIVDYEPK SQIGTLLTTA DVTLANARLE GNFTYKIFKD STNALIMGKE KYRDLISKSM 
QNDMFKFASQ KVASSDDKFE QYELYLRLVD DEGKWQMASY FMPMVNELDL GAALDLHILN 
RIAQILPSKI LPDGSLAINL GKEILNSDEN FYKLEAVLKK ISASSKFKNY IEIPNKDDIS 
LQSVIKLTNK LKEFGFGFGF DHFGLDAKSI ERLKELNPDY VKIQAANIID FFSENGSAQT 
RQSLEVIMNS KDIKLVAIGV ENEEQKKKLL ELGIMNMQGI YIDEIKNIG