| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_2186 |
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| Symbol | |
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| ID | 5595681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter concisus 13826 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009802 |
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| Strand | + |
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| Start bp | 1251816 |
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| End bp | 1253669 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640929816 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001467098 |
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| Protein GI | 157164653 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00338141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCG CAAAAGACTC TTTTTCTCAA ATAGAAGAGC TTTTTGTTGA AAATGCAAAA
GGCTTTTTGA CATACGAAAA ATTAGTAAAA TTATTAGACA AAGCCCCGAC GGCTACGATA
GTAAAAAAGA TAGAACAACT CGCAAAAACA AACAAAGTCC AGCTCATCAC ATCTGCTGAG
GCTGCAAAGC TTAGAAATTT AGCTGACGCC AAAAAACGTC AAGAAAATGC TCAAAAAAGC
GACCAAGATA TCGACGAAGA CCTCGATCTT TCAAGCGAAA CTGACCTTTT AGAGTGGTCA
AGATCAGATA GCCCAGTCAG AATGTATCTA AGAGAGATGG GCCAGATCGC ACTTCTTACA
AAAGACGAAG AGGTAGAGAT CAGCAAGAGG ATCGAGCTTG GCGAAGATAT CATCATCGAC
GCATTTTGTT CGGTGCCATT TTTGATCGAT TTCATACTTG ATTACAAAGA GCCACTTATC
AACAGAGAGC GCCGCGTAAA AGAGCTTTTT AAAAGCTTTG AAGACGAGAG CGAAAATGAA
AATGAAGATG GCGAAGAGGA TATAGACGAA GAGGATGAGG AGAACGAAGA GAACGAAGCT
CCTAAAAAAT CAGCCAAAAA CGACAAGCGC GCTGAAAAAG TTATAGAAAG CTTTAAGGCT
CTTGAAAAAG CTAAAAAAGA GTGGCTAAAG ACCGCAAACA AGCAAGATAA AGTTGAAAGC
GACGATACAG CTTCAAAGAT GACGCTTGCG TTTAAAAAGA AAATTTTAAA AGAGAAGCTG
ATGGACCTTG GCCCAACAAG TAAGCTAATT AGCGAGATCG TAAAATCAAT GGAGACAGCT
CTTAAAAGCG ACGACGAATT TGATAGAGAG CTAAAGCGCT TGGAGTATCG CTTGCCAATG
TTTAGTGACG AGCTAAAGAA AAATCACAAA AGCATCTTAA AAGATATCAT CAAGCTTAGC
AAAGAAGAGA TCGCGGCTCG CGTGCCAGAG GCTACGATGG TCTCAACCTA TGTCGAGATC
AAAAAGCTTT TTACGACAAA AGAGGCTAGC AAACAGGGCT TTGACCTTGA GCCAGCAAGA
CTAAAAGAGA TTTTAGAGCA GATCAAGCGT GGAAAGAAAA TTTCAGACGA AGCAAAAGCT
AGAATGGCTA AGTCAAACCT CCGTCTAGTC GTAAGTATCG CAAAACGCTA TACAAACAGG
GGTTTGCCAT TTCTTGATCT CATCCAGGAG GGCAACATCG GCCTTATGAA GGCGGTTGAT
AAATTTGAAT ATAGAAAAGG CTATAAATTT TCAACCTACG CCACATGGTG GATACGCCAG
GCTATCTCAC GCGCGATCGC TGATCAGGCA AGGACGATTA GGATACCTAT CCACATGATA
GAGACGATCA ATCGTATCAA CAAAATCAAC CGCAAATACC TCCAAGAAGA AGGAAAAGAG
CCTGATGTAA GCGTCATCGC AAAAGAGGTC GGACTAAGCG TCGATAAGGT AAAACAGGTG
ATCAAGATCA CAAAAGAGCC TATCAGCCTT GAAGCACCAA TCGCAAACGA AGAAGACGGT
AAATTTGGAG ATTTTGTCGA GGACAAAACT TCTCTATCAC CGATAGATCA AATTTTAAAA
AGTGACCTTA GAGAGCAAAT CGACGATGTG CTTTCACAGC TAAATGAGCG CGAAAAGGCA
GTTATTTCGA TGAGATTTGG TCTGCTTGAA GATGAGAGCG ACCGCACACT TGAAGAGATC
GGCAAGGCGC TAAATGTCAC TCGTGAACGC GTCCGCCAGA TAGAAAGCTC AGCTATCAAG
AAACTAAAAC ACCCAAAAGT TGGTAGAAAA CTTAAAAACT ACATCGAGGG CTAA
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| Protein sequence | MSAAKDSFSQ IEELFVENAK GFLTYEKLVK LLDKAPTATI VKKIEQLAKT NKVQLITSAE
AAKLRNLADA KKRQENAQKS DQDIDEDLDL SSETDLLEWS RSDSPVRMYL REMGQIALLT
KDEEVEISKR IELGEDIIID AFCSVPFLID FILDYKEPLI NRERRVKELF KSFEDESENE
NEDGEEDIDE EDEENEENEA PKKSAKNDKR AEKVIESFKA LEKAKKEWLK TANKQDKVES
DDTASKMTLA FKKKILKEKL MDLGPTSKLI SEIVKSMETA LKSDDEFDRE LKRLEYRLPM
FSDELKKNHK SILKDIIKLS KEEIAARVPE ATMVSTYVEI KKLFTTKEAS KQGFDLEPAR
LKEILEQIKR GKKISDEAKA RMAKSNLRLV VSIAKRYTNR GLPFLDLIQE GNIGLMKAVD
KFEYRKGYKF STYATWWIRQ AISRAIADQA RTIRIPIHMI ETINRINKIN RKYLQEEGKE
PDVSVIAKEV GLSVDKVKQV IKITKEPISL EAPIANEEDG KFGDFVEDKT SLSPIDQILK
SDLREQIDDV LSQLNEREKA VISMRFGLLE DESDRTLEEI GKALNVTRER VRQIESSAIK
KLKHPKVGRK LKNYIEG
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