| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_2098 |
|---|
| Symbol | |
|---|
| ID | 5597057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 1766027 |
|---|
| End bp | 1766899 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640930308 |
|---|
| Product | S-ribosylhomocysteine lyase (autoinducer-2 productionprotein LuxS; AI-2 synthesis protein) |
|---|
| Protein accession | YP_001467584 |
|---|
| Protein GI | 157165250 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2107] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.19682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCATAATC TAAAAACCAT AAACGTCGCT CACTCGCCGG ACGCTGACGA TATTTTCATG
TATGCCGCAG TCAAATTTGG CTGGGTTAGC AGTAAAAATT TAGCCTTCAC ATCAAAGGCG
CTTGATATAG AAACGCTAAA CGAAGAGGCA CTAAAAGGCA CTTACGAGGC TACAGCGATC
AGCTTTGCGC TCTATCCAAA AATTTGCGAT GAATTTGCAC TTTTACGCTG TGCGGTGAGC
TTTGGCAAAG GATACGGACC AAAGCTTATC AAGCTAAAAG GCAAGCAGCT AAAGCGAAAT
TTCAAGGTCG CGCTATCTGG CAAAAACACG ACAAATGCCC TGCTCTTTCG CATAGCCTAC
CCAGAGGCAA GGATCGTTTA TAAAAATTTC TTAGAGATAG AAAATGCCGT GCTTAGCGGC
GAGGTCGATG CTGGCGTGCT CATACATGAA AGTATCTTAA ATTTCTCTGA CAAGCTCTGC
GTCGAGCGTG AGATTTGGGA CATCTGGAGC GAGCTAAACG GCGAAAATTT ACCGCTTCCA
CTTGGTGGCA TGGCGCTTAG ACGAAGCCTG CCCATAACCG ACGCGATCGA GTGTGAGAGA
GTGCTTAGCG AGGCCGTTAG GATCGCCACT TCGCACAAGC CATTTTTATC TCACATGCTA
ATGGAGCGAA ATTTAATAAG AGTTGGCAAA GACGAACTAA AAACATATCT AAATTTATAT
GCAAATGACG AGTCTATAAG CATGAATGAA ATGCAGCTAA AAGCGCTAAA CAAGCTCTAT
CAAATAGGCT TTGAAAAAGG CTTTTTTGAA AAGCCAATCG ACGTAAATGA CTACCTAATC
CCAACTGAAT ACAACGAAGT AAGGTTTAGC TGA
|
|---|
| Protein sequence | MHNLKTINVA HSPDADDIFM YAAVKFGWVS SKNLAFTSKA LDIETLNEEA LKGTYEATAI
SFALYPKICD EFALLRCAVS FGKGYGPKLI KLKGKQLKRN FKVALSGKNT TNALLFRIAY
PEARIVYKNF LEIENAVLSG EVDAGVLIHE SILNFSDKLC VEREIWDIWS ELNGENLPLP
LGGMALRRSL PITDAIECER VLSEAVRIAT SHKPFLSHML MERNLIRVGK DELKTYLNLY
ANDESISMNE MQLKALNKLY QIGFEKGFFE KPIDVNDYLI PTEYNEVRFS
|
|---|
| |