Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CCC13826_0680 |
Symbol | ispG |
ID | 5595911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter concisus 13826 |
Kingdom | Bacteria |
Replicon accession | NC_009802 |
Strand | - |
Start bp | 735178 |
End bp | 736236 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640929301 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_001466597 |
Protein GI | 157164894 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.954282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCAACGAT ACCCGACAAA ACAGATAAAA ATTCGCGATG TTTTAATAGG CGGTGACGCA CCGATCTCCG TGCAGTCGAT GACATTTTCA AAGACAAAGG ACGTAAAAGG CACGCTAGAG CAGATACAAA GGCTATATTT TGCAGGCTGT GACATCGTGC GCTGCGCAGT TTTTGACAAA GAGGACGCCA GCGCGCTAAA GCAGATCGTC GCCGGCTCAC CCATCCCAGT CGTTGCAGAC ATACATTTTA ACCACACCTA CGCGCTCATC GTTAGCGAAT TTGTCGATGC TATCCGTATA AATCCAGGCA ACATCGGCTC AGCTAAAAAC ATAAAAGCAG TCGTTGATGC CTGCAAGCAG CGAAATTTAC CCATCCGCAT AGGCGTAAAT TCTGGCTCGC TTGAAAAGCG GTTTGAAGAC CGCTACGGCC GCACGGTGGA GGCTATGGTG GAGAGTGCCT TATACAACAT CAAGCTTCTT GAGGATTTTG ACTTTACGGA TATTAAAATT TCACTTAAAT CAAGCGACGT CGAGCGCACT ATGCAAGCTT ACAGAGCGCT TCGTCCAAAG ACAAACTACC CATTTCATCT AGGCGTAACA GAGGCTGGCA CGGCGTTTCA TGCGACTATC AAGTCCGCGA TCGCACTTGG CGGGTTACTA CTTGAGGGCA TCGGCGATAC GATGAGGGTT AGCATCACGG GCGAGCTTGA AGAGGAGATC AAAGTCGCAA AGGCGATCTT AAAAGATAGC GGCCGCCAAA AAGAGGGGCT AAACATCATC TCATGCCCAA CTTGTGGGCG TTTGCAAGCT GATCTCATGG CAGCAGTAAA GCTCGTAGAA GAAAAGACAA AAGATATAAA AGAGCCGCTA AACGTCTCAG TGATGGGCTG CGTGGTAAAT GCTATCGGCG AGGCAAAGGG CGCAGACGTA GCCATAGCCT TTGGCAAGGG AAATGGCATG ATCATGCGCC ACGGCGAAGT GGTCGCAAGG CTGCCTGAGA GCGAGCTTGT GGATAGATTT TTACAAGAGA TCGACGACGA GATAAAGAGC AGAGGATAA
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Protein sequence | MQRYPTKQIK IRDVLIGGDA PISVQSMTFS KTKDVKGTLE QIQRLYFAGC DIVRCAVFDK EDASALKQIV AGSPIPVVAD IHFNHTYALI VSEFVDAIRI NPGNIGSAKN IKAVVDACKQ RNLPIRIGVN SGSLEKRFED RYGRTVEAMV ESALYNIKLL EDFDFTDIKI SLKSSDVERT MQAYRALRPK TNYPFHLGVT EAGTAFHATI KSAIALGGLL LEGIGDTMRV SITGELEEEI KVAKAILKDS GRQKEGLNII SCPTCGRLQA DLMAAVKLVE EKTKDIKEPL NVSVMGCVVN AIGEAKGADV AIAFGKGNGM IMRHGEVVAR LPESELVDRF LQEIDDEIKS RG
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