Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CBUD_2100 |
Symbol | topA |
ID | 5457655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Coxiella burnetii Dugway 5J108-111 |
Kingdom | Bacteria |
Replicon accession | NC_009727 |
Strand | + |
Start bp | 2066078 |
End bp | 2068375 |
Gene Length | 2298 bp |
Protein Length | 765 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | |
Product | DNA topoisomerase I |
Protein accession | YP_001425405 |
Protein GI | 154707151 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000378679 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTAAAT CTTTAGTCGT GGTCGAATCG CCTGCCAAAG CGAAAACGAT AGAAAAATAT TTAGGCAAAG ACTTTAAAGT CATGGCCTCC TATGGTCACG TGCGCGATCT TATTCCCAAA GAAGGCGCCG TCGATCCCGA GGATCATTTT AAAATGCATT ATCAAGCCAT TGAGCGAAAT ATTCGACACA TGGATGCCAT CGCCAAAGCG CTCAAACCTT GCCATAACTT ATATCTCGCC ACCGACCCCG ATCGCGAAGG AGAGGCCATT GCGTGGCATG TCAAACAAAT GCTGGAAAGC CGAAATGGTT TAAAAGACAA AAAATTTTCA CGCGTTGTCT TCCATCAAAT TACTAAAAAA GCCGTTCAAC ATGCCATTGA AAATCCGCGC GATATTTCCA TGGACCTCGT GAACGCACAA CAAGCACGAC GCGCATTGGA TTATTTAGTC GGTTTTAATC TGTCGCCGTT GCTGTGGAAA AAAATTCGTC CCGGTTTATC TGCCGGGCGC GTGCAAAGTC CCGCGCTTCG TTTGATCGTC GAAAGAGAAA TTGAAATTGA AAATTTTGAA AGTCAGGAAT ATTGGACTAT ACACGCCGAC TGTCACGCGC AACAACAACC TTTTGACGCG CGTTTAATCG AATTTCAAGG TGAAAAGCTC GAACAGTTTT CAATTGTCAA TGAAAAACAA GCCCACGAAA CACGTGATGC CATTACACAA GCCGCCAACG GAAAATTGAC AGTTGCTAAA GTCGTTAAAC GCGAACGAAA ACGAAATCCA GCGCCCCCTT TTATTACTTC AACCATGCAG CAAGAAGCCG CACGCAAACT CGGTTTTTCT GCTTCAAAAA CCATGCAAAT CGCTCAACAA TTGTATGAAG GCGTTAATCT CGGTGAAGAA GGCGCGATGG GTTTAATCAC TTATATGCGA ACCGATTCTG TCACGCTTGC ATCCGAAGCG TTACAAGAAA TTCGTCAATT AATCGAAGAA AAATACGGCC AAGAAAATGT ACCCGAACAA ACACGGATTT ATAAAACCAA ATCAAAAAAC GCGCAAGAAG CGCACGAAGC TATTCGTCCT ACCTCGGCGT TTCGCACTCC CGAAAATTTA AAAAAATATT TAAATAGCGA TCAATTAAAA CTTTACACAT TAATTTGGAA ACGAACGATC GCCTGTCAAA TGATCGAAGC GACTTTACAT ACCGTGGCCG TCGATTTAAA GGCTCCCAAT GCGATTTTTC GGGCTAACGG TTCAACCATT GTAAAACCGG GATTTATCTC GGTTTATCAA GAAACTTTCG ATGACAAGAA AAAAGAAGAA GAAAGCGATA GCAAAATGCT TCCACCGTTG GAAGAAGGTC AAACCGTTGA TGTTAATGAA ATTAAAAGCG AGCAACATTT CACTGAGCCT CCACCTCGTT ACACCGAAGC CAGTTTAGTA AAAGCGCTTG AGGAATACGA CATCGGCCGA CCTTCTACTT ATGCCAGCAT TATTGCGACT TTGAAAAACC GTAAATACGT CGATGTGGAT AATAAACGTT TTATTGCCAC TGATGTTGGC CGCATCGTTA ACCGTTTCCT TACGCATTAT TTCACTAAAT ACGTTGATTA TGGATTCACC GCTAAATTAG AAGACGAACT CGACGACATT GCCCGCGGCG AAAAAACGTG GATTCCCGTT TTAGAAACCT TTTGGTCACC GTTTAAAAAT TTGGTGGACG TCACAGAAAA AACAGTTAAG CGTAGCGATG TGACGCAAGA AAAAATTGAT GAAAAATGCC CAAAATGCAG CGCTCAATTA TCCATTCGGC TAGGTAGGCG CGGACGTTTT ATCGGTTGCA CGGCTTATCC CGATTGTGAT TATACACGCA ACCTCACTGA AACTGCGGCT GAAGCTCAAG CCGTACTCGA AGGGCGCCAA TGCCCAGAAT GTCAATCCAA TTTAATTATA AAAATGGGCC GTTATGGAAA ATTTATTGGT TGTAGTGGTT ATCCTAATTG CAAATACATG GAACCCTTAG AAAAACCAAA AGACACCAAT GTAACTTGTC CAAAATGTAA AAAAGGCACC ATCCTACAAC GCAAATCTCG TCGCGGCAAA ATTTTTTATT CCTGCGCCCG GTACCCCGAC TGCGACTACG CTCTTTGGAA CGAACCCGTT GCCGAAGCTT GCCCCAAATG CGGCTGGCCT ATTTTATCGA TAAAAACAAC AAAAAGTCGC GGCACAGAAA AAGTATGCCC CCAAAAAAGT TGTAACTTTA TAGAGGCATA CGATGGAGAC AAACCATCAC TCGATTAA
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Protein sequence | MVKSLVVVES PAKAKTIEKY LGKDFKVMAS YGHVRDLIPK EGAVDPEDHF KMHYQAIERN IRHMDAIAKA LKPCHNLYLA TDPDREGEAI AWHVKQMLES RNGLKDKKFS RVVFHQITKK AVQHAIENPR DISMDLVNAQ QARRALDYLV GFNLSPLLWK KIRPGLSAGR VQSPALRLIV EREIEIENFE SQEYWTIHAD CHAQQQPFDA RLIEFQGEKL EQFSIVNEKQ AHETRDAITQ AANGKLTVAK VVKRERKRNP APPFITSTMQ QEAARKLGFS ASKTMQIAQQ LYEGVNLGEE GAMGLITYMR TDSVTLASEA LQEIRQLIEE KYGQENVPEQ TRIYKTKSKN AQEAHEAIRP TSAFRTPENL KKYLNSDQLK LYTLIWKRTI ACQMIEATLH TVAVDLKAPN AIFRANGSTI VKPGFISVYQ ETFDDKKKEE ESDSKMLPPL EEGQTVDVNE IKSEQHFTEP PPRYTEASLV KALEEYDIGR PSTYASIIAT LKNRKYVDVD NKRFIATDVG RIVNRFLTHY FTKYVDYGFT AKLEDELDDI ARGEKTWIPV LETFWSPFKN LVDVTEKTVK RSDVTQEKID EKCPKCSAQL SIRLGRRGRF IGCTAYPDCD YTRNLTETAA EAQAVLEGRQ CPECQSNLII KMGRYGKFIG CSGYPNCKYM EPLEKPKDTN VTCPKCKKGT ILQRKSRRGK IFYSCARYPD CDYALWNEPV AEACPKCGWP ILSIKTTKSR GTEKVCPQKS CNFIEAYDGD KPSLD
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