Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CBUD_1246 |
Symbol | mfd |
ID | 5457731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Coxiella burnetii Dugway 5J108-111 |
Kingdom | Bacteria |
Replicon accession | NC_009727 |
Strand | + |
Start bp | 1224232 |
End bp | 1227705 |
Gene Length | 3474 bp |
Protein Length | 1157 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | |
Product | transcription-repair coupling factor |
Protein accession | YP_001424606 |
Protein GI | 154707070 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.545868 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATTAAAG TTGAAATGAC TCCGATAAGC CCTTTACAAC CTCCCATTCC TCGCTCCATT GACAATCGAC TCCAATGGGG AAATTTAAAA GGTGATAGCG TCAGCCTTGC AATCAGCACT CTTGCGGAAA AAAATCAGGG GCCTTTGTTA TTAATCACAC CGGATGTTCA CTCGGCTAAT TATTTACACC GTTCATTGCC ATTTTTTTCT AGCGCCGACA CCCCTATCTT ACATTTTCCT GACTGGGAAA CATTGCCATA CGATTATTTT TCCCCCCACG AAGATATTAT TTCTGAACGC TTGCTAACGC TTTACCGCTT ACCGCGTTTA TCGTCAGGAA TTATCATCAG CGCTCTTCCC ACCTTATTAC AACGCCTTCC TCCCGCCGAT CACTTAGAAA AAAATACTTT TATTTTATCC GTGGGTGAAA AGTTTTCTTT GCAAGAAAAT CGTGAACGTT TAATATCGGC GGGTTACCGT TCCGTTCAAC AAGTGATGGA ACATGGTGAA TATGCTCAAC GCGGGTCGAT CATCGATATT TACCCCATGG GAAGCCCACT TCCTTACCGA ATCGAATTAT TTGACGATGA AGTAACAAGC ATTCGCAGCT TTGATCCCGA AAGCCAGCGA TCCGTAGAAA AAATAGAATC GGTTCGGTTG TTACCGGCGA GAGAATACCC GTTAACGAAA GAAGCCATTA CGCATTTTCG ACAATCGTGG CGTGCAAAAT TCTTGGGTAA CCCGCAAGAG GCTCCTATTT ATCAGCAAAT CAGTGAAGGA GAAGCGGCGG CCGGTATTGA ATATTATTTA CCGTTGTTCT TCGAAACCAC CCAAACTTTT TTTTCCTATT TGCCGAAGAA TACCACCGTT ATTTTATTTG AAAAACTGGA AACCGTTGCT CATCAGTTTT GGCAAGAAGT AGAACATCGT TATGAACAAT TACGCCACGA TTTAACACGA CCGCTCTGCC CGCCCTCAGA ATTGTTTTTG TCTTTTGAGC AATTAAGGAT AGAAATAAAA AATCATACTC AAATAAAAAT TAGCGATGCA CCCATCATTG AAAAAACAGG GCAAGTTAAC TTTGCTACGG AAAATTTCCC TCCTTTATTA ATTGATCATA AAGCTTCCCA ACCGTTTGCT CGATTAAAAA ACTTTTTACA TGAAATAACG GCTATTCAAG GGGGGCGCGT TTTATTTTGT GCCGAAACAG CCGGCCGTCG AGAAACTCTT CTAGAATTCC TTAAAGAAAT TGATACAACT CCTCAAGCCG TTAAAAATTG GCGAACGTTT TTAGCAGAGA ATACGCGAGT TGGCCTTACT ATCGCGCCTT TGGATAAAGG CGTTTTATTA TCCAGCCCGC CTTTGGCCAT TATTTCAGAA TCACAACTCT TCGGCGAACA AATCCGCCAA CGTCGCTTGG AAAAAGAACG AAAAATTGAT CCCAATTTAT TGATTCGCAA TTTAACAGAA TTGCATATTG GCGACCCCGT GGTTCACATC CAACATGGAG TCGGCCGTTA TTTGGGCTTG CAAACCATTA AAACCAGCGA TCAGGAAGCT GAATATTTAA CTTTACAATA TGCGGATAAT GACAAAATTT ATGTGCCAGT TTCTTCGCTG TATTTAATCA GCCGTTATGC CGGTGCTGAC GCTTCCCATG CTCCCCTTCA AAAACTCGGC AGCAAACAGT GGGAAAAAAT CAAAGAAAAA ACACAAAAAC ATATCCGTGA TGTGGCGGCC GAATTATTAG ATATTTACAG CCGCCGTCAA GCGGCAACGG GTTTTACTTT TTCTATACCT GAAAAAGAAT ACTCTCTTTT CCGCCAAGCT TTTCCTTTTG AAGAAACACC TGACCAAAGT GCCGCCATTA ATGACGTTAT TGTCGATATG TCTTCAAAAC GCAGTATGGA CCGCCTCATT TGTGGGGATG TTGGTTTTGG AAAAACCGAA GTGGCAATGC AAGCCGCTTT TATAGCCGTG CAGAATAATA AACAAGTCGC TGTTTTAGTT CCAACGACTT TATTAGCCGA ACAACATTTT TATAATTTTC AAGATCGTTT TGCCGACTGG CCGGTTCGTA TTGCCGCTAT TTCTCGCTTA CGCACCCAAA AACAACGCCA GCAAATTACC CAAGAACTGG CTGAAGGGAA AATAGATATT ATTATCGGCA CTCATAAATT ATTAAGCAAA GATATCCGAT TTAAAGATTT AGGTTTATTA ATTGTTGATG AAGAACACCG TTTCGGCGTT ACCCAAAAAG AACGAATTAA ATCCTTACGC GCCCATGTGG ATATTCTGAC GCTCACAGCC ACGCCGATCC CTCGAACATT GAATATGTCG CTTTCAGGTA TTCGCGACTT GTCCCTTATT ACAACCCCGC CGGCGAAACG CCTGTCTGTA AAAACTTTTG TGCACGACTA CAGTCACGTC TTAATTCGCG AAGCGATATT GCGCGAAAAT TTACGCGGCG GCCAAGTTTA TTTTTTACAT AATGATGTCG CAACGCTCGC CGCAACGGCT GAAAAATTAC GAACGATTAT TCCCGAAGCC CGTCTTGCGA TCGCCCACGG TCAAATGCGT GAACGTGATT TGGAACGAGT AATGTCCGAT TTTTATCATC AGAAATATAA TCTTTTGGTT TGTACAACCA TTATTGAGTC AGGGATCGAT ATTCCCACTG CGAATACGAT TATTATTAAT CGCGCGGATC GATTCGGCTT AGCTCAACTC CACCAACTTC GCGGTCGCGT TGGGCGTTCT CATCACCAAG CCTATGCTTA TTTATTAATA CCTGATCAAG AAGCCCTGAC GGCGGATGCA GAAAAACGAT TGAGCGCTAT TTCCCAACTG GATGATCTCG GTGTTGGTTT TAACCTGGCG ACTCATGATT TAGAAATCCG CGGCGCAGGC GAATTATTGG GCGTCGAGCA AAGCGGACAA ATTCATGATA TCGGATTTTC TTTATATTTA GAATTGCTGG AAGAGGCGGT AAGCGCATTA AAAGCCGGAC GGGAACCCCA ATTTGAAAAG CCATTACACG CAGCGTCTGA AATTGATCTT GGCATTACGA CGCTTTTACC GGAAGATTAT GTCCCCGATG TTAATGCTCG TCTTATTCTT TATAAGCGCT TAGCTAATTG CAAAAATAAA AGAGAAATCC AGGCGCTCAA AGAAGAGCTT ATCGATCGTT TTGGCCCGCT ACCCCCAGCA GCTCAACATT TGCTCCAATC TGCCGAACTG CGCTTAATTG CAAACGAACT CGGCATCCAA AAAATCAATA TCGGCCCCAA ATATGGCTAT TTTCACTTCG ATAAAAAACC CGCCATTGAT CTCACAAAGT TAATCAAGTT AATCCAAACC CAACCCCAAC GTTACCAACT GCAAGGCGAT GAATCCCTGC GTTTCATTCT TTCTAATCCC ACCCCCCAAT CCAAATTGGA AACCATCTAC GAATTAATTA AAAATTTGAA GTAA
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Protein sequence | MIKVEMTPIS PLQPPIPRSI DNRLQWGNLK GDSVSLAIST LAEKNQGPLL LITPDVHSAN YLHRSLPFFS SADTPILHFP DWETLPYDYF SPHEDIISER LLTLYRLPRL SSGIIISALP TLLQRLPPAD HLEKNTFILS VGEKFSLQEN RERLISAGYR SVQQVMEHGE YAQRGSIIDI YPMGSPLPYR IELFDDEVTS IRSFDPESQR SVEKIESVRL LPAREYPLTK EAITHFRQSW RAKFLGNPQE APIYQQISEG EAAAGIEYYL PLFFETTQTF FSYLPKNTTV ILFEKLETVA HQFWQEVEHR YEQLRHDLTR PLCPPSELFL SFEQLRIEIK NHTQIKISDA PIIEKTGQVN FATENFPPLL IDHKASQPFA RLKNFLHEIT AIQGGRVLFC AETAGRRETL LEFLKEIDTT PQAVKNWRTF LAENTRVGLT IAPLDKGVLL SSPPLAIISE SQLFGEQIRQ RRLEKERKID PNLLIRNLTE LHIGDPVVHI QHGVGRYLGL QTIKTSDQEA EYLTLQYADN DKIYVPVSSL YLISRYAGAD ASHAPLQKLG SKQWEKIKEK TQKHIRDVAA ELLDIYSRRQ AATGFTFSIP EKEYSLFRQA FPFEETPDQS AAINDVIVDM SSKRSMDRLI CGDVGFGKTE VAMQAAFIAV QNNKQVAVLV PTTLLAEQHF YNFQDRFADW PVRIAAISRL RTQKQRQQIT QELAEGKIDI IIGTHKLLSK DIRFKDLGLL IVDEEHRFGV TQKERIKSLR AHVDILTLTA TPIPRTLNMS LSGIRDLSLI TTPPAKRLSV KTFVHDYSHV LIREAILREN LRGGQVYFLH NDVATLAATA EKLRTIIPEA RLAIAHGQMR ERDLERVMSD FYHQKYNLLV CTTIIESGID IPTANTIIIN RADRFGLAQL HQLRGRVGRS HHQAYAYLLI PDQEALTADA EKRLSAISQL DDLGVGFNLA THDLEIRGAG ELLGVEQSGQ IHDIGFSLYL ELLEEAVSAL KAGREPQFEK PLHAASEIDL GITTLLPEDY VPDVNARLIL YKRLANCKNK REIQALKEEL IDRFGPLPPA AQHLLQSAEL RLIANELGIQ KINIGPKYGY FHFDKKPAID LTKLIKLIQT QPQRYQLQGD ESLRFILSNP TPQSKLETIY ELIKNLK
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