| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_C1030 |
|---|
| Symbol | |
|---|
| ID | 4010543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007953 |
|---|
| Strand | - |
|---|
| Start bp | 1066677 |
|---|
| End bp | 1067909 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637953630 |
|---|
| Product | OmpC family outer membrane porin |
|---|
| Protein accession | YP_556250 |
|---|
| Protein GI | 91781043 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00011605 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA GTTACCTCTG GGCCGGTCAG ATCATCGTGC TCGCGGCGGC CCATGCACAT
GCGCAGAGTT CGGTGACGCT GTATGGCGTC ATCGATACCG GCATCAATTA CACGAATAGC
GCCCAGACTG GTCGAAATCC GGATGGTTCG CTGAACAGCG GGTCGCAGAT CAACATGACC
GACGGGGCGA CGCGTAGCTA TGGCAGCCGG TGGGGCTTGC GGGGATCGGA GAATCTGGGC
GGTGGGCTTT CGGCGATCTT CACGCTCGAA AATGGCTACA ACATCGCGAA CGGCGCGCTC
GGTCAGGGCG GCGCGATGTT CGGCCGCCAG GCGTATGTTG GTCTCAACAG CGATATGCTG
GGCGTGGTCA CCATTGGCCG ACAGTACGAC ACGCAGGCCG ACTTCGTCTC GAACTACTCG
GTGTTCAGTG TGGCGGCGCT TTCCGGCACG ACGCCGGGCG ACGTGGATGG GCTTGGCCAC
ACTCGGCGCG TGAACAACGC GATCAAGTAC GTGAGCCCGA CGTATCGAGG GTTCACGTTC
GGCGGAATGT ATTCGCCCGG CGGCAAAGCG GGCGACTTCA CCGGTAATCA GATCTGGGCG
CTCGGTGCGA GCTACGAATT TCGCGGTTTC TCCGCGGGTG CCGGTTACAT CAACGCGCGC
GATCCGAATC TTTCGTCGTT CGGCGACAAC CCGAACTCCG GCGGCGCGGG AACGAACAAC
ATGGGGTCCG TCGGTTCGCT TACCTCGGCG CAATCGAATC CGATCTACGC TGGCTACGCG
TCGGCCCGCA CGTTCGAAAT CTATTCGGCC GGCGCAAGCT ACAAGTTCGG CAAGGCGGCT
CTCGCGGCGT CGTTTAGCCA CACGTCTTTC GGTAACCTCG GGGATCTGGA TGCCGGACCC
AATCCGTTCG ACTACAGCGG CACGGCGATC TTCAATACGG CAACCGCGAC CGTTTCCTGT
TTCGCGACTC CCACTCTCCA GCTTGGGGGA GGCTATACGT ACACGCACGG CGGCGGTGCG
GGCGGCAACG GGTCGGCATC CTACCATCAA GGCATTTTCT CAGTGCAGTA CTTCCTGTCG
AAGCGGACCG AAGTCTATTT CTACGGCGTC TATCAACTGG CGAGCGGCAC CGACTCACTG
GGGCAACCGG CAGTCGCGAA CATTGATCTG ATGACGCCGT CGAGCACGAA TCATCAATTC
GTGGGACGTG TCGGTATCGT GCAGCGCTTC TAA
|
|---|
| Protein sequence | MKKSYLWAGQ IIVLAAAHAH AQSSVTLYGV IDTGINYTNS AQTGRNPDGS LNSGSQINMT
DGATRSYGSR WGLRGSENLG GGLSAIFTLE NGYNIANGAL GQGGAMFGRQ AYVGLNSDML
GVVTIGRQYD TQADFVSNYS VFSVAALSGT TPGDVDGLGH TRRVNNAIKY VSPTYRGFTF
GGMYSPGGKA GDFTGNQIWA LGASYEFRGF SAGAGYINAR DPNLSSFGDN PNSGGAGTNN
MGSVGSLTSA QSNPIYAGYA SARTFEIYSA GASYKFGKAA LAASFSHTSF GNLGDLDAGP
NPFDYSGTAI FNTATATVSC FATPTLQLGG GYTYTHGGGA GGNGSASYHQ GIFSVQYFLS
KRTEVYFYGV YQLASGTDSL GQPAVANIDL MTPSSTNHQF VGRVGIVQRF
|
|---|
| |