Gene Bxe_C0880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBxe_C0880 
Symbol 
ID4010393 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia xenovorans LB400 
KingdomBacteria 
Replicon accessionNC_007953 
Strand
Start bp909991 
End bp911127 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content62% 
IMG OID637953487 
ProductOmpC family outer membrane porin 
Protein accessionYP_556107 
Protein GI91780900 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.456854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.339444 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAAGC AATTCGTTAC GGCTGTACCT CTACTGTGCT CCGCGCTGGC CTGTCACGCG 
CAAAGCAGCG TGACGCTGTA CGGCACGCTC GACACGGGCA TTACCTATAC GAACAACCAG
GGCGGCGGCG CGTCCTGGCA AGAGAATAGC GGCTCGCGTG GCGCCAGCAA GTGGGGTATC
AAGGGCGCGG AAGATCTCGG CAATCAATAT AAAGCGATCT TCGACCTGGA AGGCGCGATC
AGTTCCGCCA CCGGGGCGAT GCTCGGCAGC CGCGAATTCG GCCGCTATGC CTACGTTGGC
CTCACCGGCC CGCTCGGCAC GCTGACCGTC GGCCGCCAGT ACGACCTCGC GATCGACTAT
GCCCAGGGAC TCACCGACGC GCTGCGCTTC TCCGGCGCAT TGGCGACCCA CGCAGGCGAC
GTGGACAACC TGTGGGGCAC TTACGAACTC GATAACGACA TCAAGTACAC CACGCCCACG
ATTCACGGCT TTACTGCCTC GACGATGATC AGTGTGGGCG GCGTAGCCGG CGATACGTCG
CGTAACAGCG CCTATGAGTT CGGCGCGGGC TATGTCGGCG GTCCGTTGAA ACTGGGCGCC
ACTTACCTGA ATCTGCGCGA TCCGGCTATT TCCCTGTATG GCGCCGCGAC TGTCCCGGCG
ACCGGTGGCA CTTTCGCCAA TCCGATCACC AATCCGATTT TCAGCGGCTA TGTGTCGGCG
AACCGCATGC AGGTCGCGTC GATCGGCGGG TTGTACACGA TCGGCGCGTC GACGCTGGGC
GCGCAGTATT CGCTGACGCT CTTTGACGAC ATGGTACACA CGGCGGCGAC GCCGAACGTC
GGCTCGGCCC GCTTCGCTAA TGCGGAAGTG AGCTACATGT ACCAGTTCAC GCCGTTCGCT
GACGCGGGCA TTTCTTACGA CTACACCGAG GCCTCGTCGG CGCATTACAG CCAGATCAAC
TTCGGCGCGC AGTACAACCT GTCGAAAGCG ACCTTCCTGT ATTTCATCAC CGCGTGGGAG
CATGCATCGG GTGAAAACTC GCTTGGCAAA CCGGCAGTCG CGGCGATTTC CACGTTGAGC
GCATCCACGA CGGCGAATCA GCTCGCCATG CGGGTCGGCA TTCGTCACTC GTTCTGA
 
Protein sequence
MRKQFVTAVP LLCSALACHA QSSVTLYGTL DTGITYTNNQ GGGASWQENS GSRGASKWGI 
KGAEDLGNQY KAIFDLEGAI SSATGAMLGS REFGRYAYVG LTGPLGTLTV GRQYDLAIDY
AQGLTDALRF SGALATHAGD VDNLWGTYEL DNDIKYTTPT IHGFTASTMI SVGGVAGDTS
RNSAYEFGAG YVGGPLKLGA TYLNLRDPAI SLYGAATVPA TGGTFANPIT NPIFSGYVSA
NRMQVASIGG LYTIGASTLG AQYSLTLFDD MVHTAATPNV GSARFANAEV SYMYQFTPFA
DAGISYDYTE ASSAHYSQIN FGAQYNLSKA TFLYFITAWE HASGENSLGK PAVAAISTLS
ASTTANQLAM RVGIRHSF