Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bxe_C0880 |
Symbol | |
ID | 4010393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia xenovorans LB400 |
Kingdom | Bacteria |
Replicon accession | NC_007953 |
Strand | - |
Start bp | 909991 |
End bp | 911127 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637953487 |
Product | OmpC family outer membrane porin |
Protein accession | YP_556107 |
Protein GI | 91780900 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.456854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.339444 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTAAGC AATTCGTTAC GGCTGTACCT CTACTGTGCT CCGCGCTGGC CTGTCACGCG CAAAGCAGCG TGACGCTGTA CGGCACGCTC GACACGGGCA TTACCTATAC GAACAACCAG GGCGGCGGCG CGTCCTGGCA AGAGAATAGC GGCTCGCGTG GCGCCAGCAA GTGGGGTATC AAGGGCGCGG AAGATCTCGG CAATCAATAT AAAGCGATCT TCGACCTGGA AGGCGCGATC AGTTCCGCCA CCGGGGCGAT GCTCGGCAGC CGCGAATTCG GCCGCTATGC CTACGTTGGC CTCACCGGCC CGCTCGGCAC GCTGACCGTC GGCCGCCAGT ACGACCTCGC GATCGACTAT GCCCAGGGAC TCACCGACGC GCTGCGCTTC TCCGGCGCAT TGGCGACCCA CGCAGGCGAC GTGGACAACC TGTGGGGCAC TTACGAACTC GATAACGACA TCAAGTACAC CACGCCCACG ATTCACGGCT TTACTGCCTC GACGATGATC AGTGTGGGCG GCGTAGCCGG CGATACGTCG CGTAACAGCG CCTATGAGTT CGGCGCGGGC TATGTCGGCG GTCCGTTGAA ACTGGGCGCC ACTTACCTGA ATCTGCGCGA TCCGGCTATT TCCCTGTATG GCGCCGCGAC TGTCCCGGCG ACCGGTGGCA CTTTCGCCAA TCCGATCACC AATCCGATTT TCAGCGGCTA TGTGTCGGCG AACCGCATGC AGGTCGCGTC GATCGGCGGG TTGTACACGA TCGGCGCGTC GACGCTGGGC GCGCAGTATT CGCTGACGCT CTTTGACGAC ATGGTACACA CGGCGGCGAC GCCGAACGTC GGCTCGGCCC GCTTCGCTAA TGCGGAAGTG AGCTACATGT ACCAGTTCAC GCCGTTCGCT GACGCGGGCA TTTCTTACGA CTACACCGAG GCCTCGTCGG CGCATTACAG CCAGATCAAC TTCGGCGCGC AGTACAACCT GTCGAAAGCG ACCTTCCTGT ATTTCATCAC CGCGTGGGAG CATGCATCGG GTGAAAACTC GCTTGGCAAA CCGGCAGTCG CGGCGATTTC CACGTTGAGC GCATCCACGA CGGCGAATCA GCTCGCCATG CGGGTCGGCA TTCGTCACTC GTTCTGA
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Protein sequence | MRKQFVTAVP LLCSALACHA QSSVTLYGTL DTGITYTNNQ GGGASWQENS GSRGASKWGI KGAEDLGNQY KAIFDLEGAI SSATGAMLGS REFGRYAYVG LTGPLGTLTV GRQYDLAIDY AQGLTDALRF SGALATHAGD VDNLWGTYEL DNDIKYTTPT IHGFTASTMI SVGGVAGDTS RNSAYEFGAG YVGGPLKLGA TYLNLRDPAI SLYGAATVPA TGGTFANPIT NPIFSGYVSA NRMQVASIGG LYTIGASTLG AQYSLTLFDD MVHTAATPNV GSARFANAEV SYMYQFTPFA DAGISYDYTE ASSAHYSQIN FGAQYNLSKA TFLYFITAWE HASGENSLGK PAVAAISTLS ASTTANQLAM RVGIRHSF
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