Gene Bxe_C0653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBxe_C0653 
Symbol 
ID4010167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia xenovorans LB400 
KingdomBacteria 
Replicon accessionNC_007953 
Strand
Start bp681606 
End bp682910 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content56% 
IMG OID637953281 
Productcarbohydrate-selective porin OprB 
Protein accessionYP_555901 
Protein GI91780694 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3659] Carbohydrate-selective porin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.600231 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.965177 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATGTA TCGCCATGAC CGGTGCCGCG GCGGAAGAGG TAGCACCATC ACCGGTGGTG 
CAACCCGCAC CCGCCGCAGA AACGACAGAC TGCGCGCGAC TGGACGCGCT GAACACGCGC
AGCCGGAGTG CAGAGGTTCA AATGCCGGTG TGTCAGACCA TGCTGTCAGA CATCGGTGGA
TGGCGCACCT GGCTTGCGGA TCGTGGTATC GGTTTTCAGG CATCTGCTCT CGCAGGTGTC
AACTACGACG TGCTAGGTCA TGCGCGAACC CCGCAACTTT ACGGCGGACA GAGTCCAACT
TATAACACCT CGTCATACGC GCTGTTCACC TACGATCTTA CCCGGCTCGG AATGCCTGGC
GATGCACAGC TCACAGTCAA GGCAGACTGG TACACAAACA GCTACTTCCC CTCCATACGT
TATTCCGGCT TTACGGCCGT GGCGATAAAT CAAAGATTTC TGAATGGCGA TGTCGAATTA
CAATACGGCT ACTTCGACCT GTCGCATAGT TTTTATGGGA CTGTCCTTGG TGGCAATCCC
GCGGTTGCTT CTTTTGGGCC GCAAAGCAAT GTTCTCTATT CTGCAGGTAT AAGCTCGGAG
TCACCGACGC CAGCGGCCCA GATCATTCTC CGGGATCCAG CAACCCAACA CTTCTATAAC
AATTTCATTG TTTCCCGAAG CACTAGCCCC GACGGACAAC TGGTGGAAAA TCGGGCGAAT
CCCGTTGGCC TGCGGTTTTC GATTCCCGGC GACGGAGCGC TTTTCGTCGA CGAAGTCGGG
TACAAGAGGG ATGCATCTGT CAGTTCGCGG AGCCTTTGGG TACGCGGGGG TGCCGTGATC
AACACGAGCG ACTACCCGGC GCTTGACAAG ACCAGATCAC AAACGTCTTC ACTTCACAAC
AGGGCCTTTT ATGGAGCCGC GACCGCGCAA CTTACGTCAC CATACAGCGA CGCGCGCGGC
CTGTATGTTG ATGCGAAAGT CGATTATTCT CCGAGCGACG TCGCACTGTT CGCGCATGAC
TATAGTCTGA CCGCCTTCAT TCTTGGACCA TTCAGCACAC GCCGGAAAGA TATGGTTTCA
CTATCGTGGT CCCAAAGCTT TTTCAGTCCG GAGGAACGCA GAACGCTGCA GGCCCGTGGC
GCGGATTCCG CGCATTCCAC CAGTTCACTG GAGATTTCCT ACGCATTGAA TCTTGCCCGC
GGCGTCTATC TGATAAGTTC CCTGACCAGG ACCTGGAATC CGGTATTTGC CCCGCTTCAG
CCACCGGCCC TGTTTGTCAA TGAATCGGTG TCAGTGACGT TCTAA
 
Protein sequence
MSCIAMTGAA AEEVAPSPVV QPAPAAETTD CARLDALNTR SRSAEVQMPV CQTMLSDIGG 
WRTWLADRGI GFQASALAGV NYDVLGHART PQLYGGQSPT YNTSSYALFT YDLTRLGMPG
DAQLTVKADW YTNSYFPSIR YSGFTAVAIN QRFLNGDVEL QYGYFDLSHS FYGTVLGGNP
AVASFGPQSN VLYSAGISSE SPTPAAQIIL RDPATQHFYN NFIVSRSTSP DGQLVENRAN
PVGLRFSIPG DGALFVDEVG YKRDASVSSR SLWVRGGAVI NTSDYPALDK TRSQTSSLHN
RAFYGAATAQ LTSPYSDARG LYVDAKVDYS PSDVALFAHD YSLTAFILGP FSTRRKDMVS
LSWSQSFFSP EERRTLQARG ADSAHSTSSL EISYALNLAR GVYLISSLTR TWNPVFAPLQ
PPALFVNESV SVTF