| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1204 |
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| Symbol | |
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| ID | 4008307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | - |
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| Start bp | 2042302 |
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| End bp | 2044332 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637951482 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_554102 |
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| Protein GI | 91778894 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0000134686 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.935077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACGTT CCAATGTAGA GCGGAGGGAC GCCGTGTCCA CTTTCACGTC ATCGTTTACG
AATCCCGATT CGGGCCGCCC GGGCGTCGCA CTGGTGAGTA TCAGCCGGTT GCGGTCGCTT
TGCGAGACCG TCGCGCCACG CTACGCCGGG CGCGCGAAAT TCTTTTCGGT CCGGGAAGGC
TACGGCGCCG CCGTCACCGC CTTGCAGGCG TACGTGGAGG CCGGTTCGGT GGACGTGGTG
CTGGCCGCCG GATCGAACGG CGCCTACTTG CGCGACCACC TGAACGTGCC GGTGGTGATG
GTCAAGGTGA ACGGCTTCGA CGTGCTGGGC GCGATCACCC GGGCCACGAC CACATGGCCC
AATGCGCAGA TCGGCCTCGT GCTGCACGAA ACGATCTCGC ACGAGCTGAG CGACCTGAGC
GCCTGGCTGA AAGTCAGCCT GAAACAGCGC GCGTACCGCT CGATCGACGA AGTGCGGCTC
GCGGTCGACA ACCTCGCCGC CGAAGGCTGC GGCGTCATCA TCGGGCCCGG CATGGCCTGC
GATTTTGCCC AGCAGGCGGG CCTCGCGAGC GTTTTCCTGT ACTCGCTCGG CGCGGTCGAA
GAAGCGTTCG AGCGCTCGGT CGAACTGGCG CGCGTGAGCC GCCAGAAGGA ATCGAAGCGC
GTGCGCCTGA ATACGATCGT GGCGCATCTG CGCGACGGCG TCGCCGCCTT CGACGAAGCC
GGCCAGGTCG AAGCCGTCAA TCCGGCCATG CTCGATCTGC TGGGCCTTGA CCGCGAGCGG
GACGTGGCCG GGCAGGTGGA GCGTGCCGTC GGGCCGTTGC TGCGCGAGAC GCTGGAGCAC
GATATGCCGA TCGAAGAACG GATCGAGCAG ATCGGCGGCC GCGCGCTGAT CGTCAACTGC
CTGCCGATCG TGGAGCAGGG CGTGCGCTCC GGCTCGGTCG TGACACTGCA GGACGCGCTG
GTCGCACAGC GGATCGACCG CTCGCTGCGG ACCAGCCAGC GGCCGAAGCA TCTGGTCGCG
CGGCATCGAC TGGACGATCT GATCGGCAAC TCGGCGGCGC TCGAACGGGT GCGGCGGCTC
GCGCGCGCCG GCGCGGCGCA CGACGCCACC GTGCTCCTCA GCGGTGAAAG CGGAACCGGC
AAGGAACTGG TCGCGCAAGG CATCCACAAC GCGAGCTCGC GGCGCGGCAA TCCGTTCGTT
GCGTTCAATT GCGCGGCGCT GCCCGAGGGG CTGATCGAAA GTGAACTGTT CGGCCACGAA
GAAGGCGCGT TCACCGGCGC GCGGCGTGGC GGCAAGCCGG GGCTCTTCGA AATCGCCCAC
ACAGGAACGA TTTTCCTCGA CGAAATCGGC GAGATGCCGG CGGCGCTGCA AAGCCGTCTG
CTACGGGTTC TGCAGGAGCG CGAGGTGATG AAGCTCGGCT CGGGGCGTGC CACGCCGGTC
GACGTGCGGG TAATCGCCGC CACCCACCGC GACCTGCATG CACTGGTCGA GCAGGGCGCG
TTTCGTGCGG ATTTGTATTT TCGTCTGAAT CTGCTTCAGA TAGAATTGCC GCCGCTACGC
GAACGGCGTG AAGATGTTCC GCAACTGGCG CGGCACTTGT TAAGCCGCAG CGCGCTCCAA
TATGGGCTGT CGGAGGTTGC GATCGAGCGG GTGCTGGCGT TCCTCGCGCC GCTGTTCGCG
CACTACGCGT GGCCCGGCAA TGTGCGGGAG CTGGAAAATC TGTTGACGCG CGCCGCGATC
TATCCCGGCG GCGAAGCCGG CCTGGATTGG CAGGCGGTGT TTCCGGAGTT CGGGCGCATG
GAGCAGCGGC CGGCCGGCGG CGCAAGCGGC GCAGGCGGTC CAAGTGGGGC GAACGGGTCG
AGCGGCTCAC ATGCCACCGC CCAAACCACC CCGGCGCGCG TAAGCCCGAC CCGTGAGGAC
GTTCTTCACG CCCTCGAAAA GGCCGGCGGC AACCGCGCCG CGGCAAGCCG GGCGCTGGGA
ATCGGCCGGA CGACCTTGTG GCGGCTCATG AAAGACCCTT CCAGCGAATG A
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| Protein sequence | MERSNVERRD AVSTFTSSFT NPDSGRPGVA LVSISRLRSL CETVAPRYAG RAKFFSVREG
YGAAVTALQA YVEAGSVDVV LAAGSNGAYL RDHLNVPVVM VKVNGFDVLG AITRATTTWP
NAQIGLVLHE TISHELSDLS AWLKVSLKQR AYRSIDEVRL AVDNLAAEGC GVIIGPGMAC
DFAQQAGLAS VFLYSLGAVE EAFERSVELA RVSRQKESKR VRLNTIVAHL RDGVAAFDEA
GQVEAVNPAM LDLLGLDRER DVAGQVERAV GPLLRETLEH DMPIEERIEQ IGGRALIVNC
LPIVEQGVRS GSVVTLQDAL VAQRIDRSLR TSQRPKHLVA RHRLDDLIGN SAALERVRRL
ARAGAAHDAT VLLSGESGTG KELVAQGIHN ASSRRGNPFV AFNCAALPEG LIESELFGHE
EGAFTGARRG GKPGLFEIAH TGTIFLDEIG EMPAALQSRL LRVLQEREVM KLGSGRATPV
DVRVIAATHR DLHALVEQGA FRADLYFRLN LLQIELPPLR ERREDVPQLA RHLLSRSALQ
YGLSEVAIER VLAFLAPLFA HYAWPGNVRE LENLLTRAAI YPGGEAGLDW QAVFPEFGRM
EQRPAGGASG AGGPSGANGS SGSHATAQTT PARVSPTRED VLHALEKAGG NRAAASRALG
IGRTTLWRLM KDPSSE
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