| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1172 |
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| Symbol | |
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| ID | 4008339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | - |
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| Start bp | 2080887 |
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| End bp | 2082380 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637951514 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_554134 |
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| Protein GI | 91778926 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.163827 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCAA TTGAACTACG CACAAGGCAG TCTCTCGCAC TCACGCCGCG TCTGCAGCAG
TCGGTGCGTC TGTTGCAGTT GTCGTCTCTG GAGTTCCAGC AGGAGTTGCG CACGGCGCTC
GACACCAATC CGTTCCTCGA GTACGACTCG ACGGATACGG AAGACGTCGC ACTCGCCACG
ACCGCGTCCG GTGAAGAGGC TGGCGCGCTG CCGGCCGCCG ACACGGTGAG CGCAGCGGAA
CCCGACGCGA TGTCATCCGA CATGCAGTCC GAGTCAGGCG GCAACGACAC GCTGGAAAGC
TCGGGCCAGG ATGACATGCC GGGCGACTTC TCGGGCGATT ACAGCAGCCG CAGTTCGACG
CGCCAGAACG GCGACTCGGA CGGTAGCGAT CCCGCCGAGT GGGCCCGTTC CCAACCCACG
TTGCGCGAGC AACTGCACGA CTCGCTGCGC CTCTATCGCC TCGACGACCG GGATCGCGCC
GTAGCGCGCT TCATCATCGA GGCGCTCGAT GACGACGGCT ATCTGCGCCA GGATCTCGCC
GACCTCGCGG ACAGTGTCGA TCTCGAACCC GAATTGACCG AAGACGAGTT GCTGGTGGCG
CTGCGTCTCG TGCAATCGCT CGATCGTCCG GGTCTGGGCG CGCGCACGCT GTCCGAGTGC
CTGTCGCTGC AGGTCAACGC GTTGCCGGCC GACACGCCGG GGCGCGAGGT GGCGCGGCAG
ATCGTCGAAC ATCATCTGGA ACGGCTCGCA CGCCGCGAAC AGGCCGAATT GCAGAAGCAG
ATCGGCTGCA GCGCGGAAGA ACTGCGGGTT GCCTGCGCTC TCGTGCGCAA GCTCGATCCG
AAGCCGGGCA ACTGCTATGG CCGCACCGAA GACAATTACG TGGTGCCGGA CGTGATCGTG
CGCCAGGTGC GCAACAAGTG GGTCGTGGCG ATCAACCCGG CGGTGCAGCC GCGCGCGCGA
ATCCATCGCA TGTATGCGGA GCTGTTCGCG CAGTCGGCCG GCGCGAGCCG TTCGCCGCTC
GCGCAGCAGT TGCAGGAAGC GCGCTGGCTG ATCCGCAACG CGCAACAACG CTTCGATACG
ATCCAGCGCG TGGCCGAGTG CATCGTCGCG CATCAGAAGG CCTTCTTCCA GTACGGCGAA
ATCGCGCTCA AGCCAATGGT GTTGCGCGAT GTCGCCGACG AACTCGGCCT GCACGAATCC
ACCATCTCGC GCGCCACGGG CAACAAATAT ATGGCCACGC CGCGCGGCAT TTTCGAATTC
AAGCATTTCT TCCCGCGCGA GCTCGGCACC GAAAGCGGTG GCACGTGTTC CGCCGCCGCG
GTGCGCGCGC TGCTCAAGGA AATGATCGCC GCGGAAAACA CGCGCGATCC GCTCTCTGAC
GTGACGCTCG CGAAGATGCT CGCCGATCAG GGCGTGCTGG TGGCGCGTCG CACGGTAGCG
AAGTACCGGC ATCTGATGAA GGTGCCGCCG GCGGAATTGC GCCGCCAGGT TTGA
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| Protein sequence | MPSIELRTRQ SLALTPRLQQ SVRLLQLSSL EFQQELRTAL DTNPFLEYDS TDTEDVALAT
TASGEEAGAL PAADTVSAAE PDAMSSDMQS ESGGNDTLES SGQDDMPGDF SGDYSSRSST
RQNGDSDGSD PAEWARSQPT LREQLHDSLR LYRLDDRDRA VARFIIEALD DDGYLRQDLA
DLADSVDLEP ELTEDELLVA LRLVQSLDRP GLGARTLSEC LSLQVNALPA DTPGREVARQ
IVEHHLERLA RREQAELQKQ IGCSAEELRV ACALVRKLDP KPGNCYGRTE DNYVVPDVIV
RQVRNKWVVA INPAVQPRAR IHRMYAELFA QSAGASRSPL AQQLQEARWL IRNAQQRFDT
IQRVAECIVA HQKAFFQYGE IALKPMVLRD VADELGLHES TISRATGNKY MATPRGIFEF
KHFFPRELGT ESGGTCSAAA VRALLKEMIA AENTRDPLSD VTLAKMLADQ GVLVARRTVA
KYRHLMKVPP AELRRQV
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