| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1082 |
|---|
| Symbol | |
|---|
| ID | 4008429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | + |
|---|
| Start bp | 2176954 |
|---|
| End bp | 2178594 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637951603 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_554223 |
|---|
| Protein GI | 91779015 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1030] Membrane-bound serine protease (ClpP class) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.409123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00827512 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGT ATCCGCGTCT CCCGTTCCGG CAGTCTGGCT CGCGCATGTC GCTTATCCGT
GGCGGCGTCG TGGGCCGGTT GATGCGCGGC ATCACCGTGC TCGGCGTGCT TTTGGCGTTC
GGCTTCGCGT CGTGCGAATC CACTGTGGTG GATGTCCCGC TTCGCGCCGC CGTCGCGCCC
AACAGCGTGG TGGTGATTCC GGTAAATGGC GCAATCAGTC CGGCGAGTGC CGACTTCATC
GTGCGCAGTC TTCAGCGTGC CGCCGACGAG CGCGCGCAAC TCGCCGTGCT GCAACTCGAC
ACGCCAGGCG GGCTCGATAC GTCGATGCGG CAGATCATCA AGGCGATTCT CGCCTCGCCG
GTGCCGGTCG CCGCTTTCAT CGCCCCCAGC GGCGCGCGCG CGGCAAGCGC CGGCACGTAT
ATCGTCTATG CAAGCCACAT CGCGGCGATG GCGCCCGGCA CCAATCTCGG CGCGGCAACG
CCGATCCAGA TGGGCATCGG CGCCGAACCG CCGGCGGGCG GCGGCGCGCC GGGCTTGCCG
GGTATTGGCG GCGGCGGTGG CAGCGGTGGC AGCGGTGGCA GCGGCAGCGG CGACGGCGAC
GGCAATAGCC CGGTCAAACC CGCGGCCTCG ACAGCCTCCG CGCCCTCCGG TTCCGCCAGG
GCGTTGCCGC TCGACACCCA ATCGACCGAA ACGCGCAAGC AGGTCCACGA CGCGGCCGCC
TATATCCGCG GCCTCGCGCA GATGCGCGGG CGCAACGCCG ACTGGGCCGA GCGCGCGGTG
CGCGAAGCCG TGAGCCTGCC GGCGGCGGAC GCGCTCGCGC AGCACGTCGT CGATCTGAAT
GCGCGCGACG TGCCCGATCT GCTGCGCCAG CTGGACGGCC GCACGCTCGT CACGAGCGCC
GGCAACGTCA CCCTCAGGAC GGCAAACGTG CCGGTCGTCA CACTCGAAGC CGACTGGCGC
AGCCATTTCC TCGCCGTGAT CACCGATCCC AACGTCGCGC TGATCCTGCT GATGATCGGC
ATGTACGGCC TGTTCTTCGA ATTCGCCAAT CCGGGCTTCG TGCTGCCGGG CGTGGTCGGC
GCGATCAGCC TGCTGCTCGG ACTCTTCGCC ATGCAGATGA TGCCCATCAA CTACGTCGGC
CTCGGCCTGA TCTTTCTCGG CATTGCGTTT CTGATCGGCG AGGCGTTTCT GCCGAGCTTC
GGCTCGCTCG GCTTCGGCGG CGTGGCCGCG TTCGTGATCG GCGCGCTGAT GCTGATCGAC
ACCGACGTGC CCGGCTACGG CATCCCCCTG CCGATGATCG CCGCCGTGGC CGTCTTCAGC
GTACTGTTCG TGCTGGGCGT GTCGCGACTC GCGCTGCGCG CGCGGCGCCA GCCAGTGGTA
ACGGGCTCGG AAGCGCTGAT CGGCAGTGTC GGCGTGGTGC TCGACGGCGG CCTGCTGCCT
GAGAACGCCG CCTCTGACGC CGCCTCTGAC GTCACGGCAG ACGGCGCGCT GGCCGGCTGG
GCGCGCGTGC ACGGCGAACG CTGGCGGGTG TCCAGCACGG CCCCGGTCGC AGCCGGCCAT
GCGGTGCGCG TCACCGCGCG GCGCGGCCTG ACGTTGACCG TGGTGCCCAC GGAAGCACGA
CAACAAGGAG AAAGCTCATG A
|
|---|
| Protein sequence | MSTYPRLPFR QSGSRMSLIR GGVVGRLMRG ITVLGVLLAF GFASCESTVV DVPLRAAVAP
NSVVVIPVNG AISPASADFI VRSLQRAADE RAQLAVLQLD TPGGLDTSMR QIIKAILASP
VPVAAFIAPS GARAASAGTY IVYASHIAAM APGTNLGAAT PIQMGIGAEP PAGGGAPGLP
GIGGGGGSGG SGGSGSGDGD GNSPVKPAAS TASAPSGSAR ALPLDTQSTE TRKQVHDAAA
YIRGLAQMRG RNADWAERAV REAVSLPAAD ALAQHVVDLN ARDVPDLLRQ LDGRTLVTSA
GNVTLRTANV PVVTLEADWR SHFLAVITDP NVALILLMIG MYGLFFEFAN PGFVLPGVVG
AISLLLGLFA MQMMPINYVG LGLIFLGIAF LIGEAFLPSF GSLGFGGVAA FVIGALMLID
TDVPGYGIPL PMIAAVAVFS VLFVLGVSRL ALRARRQPVV TGSEALIGSV GVVLDGGLLP
ENAASDAASD VTADGALAGW ARVHGERWRV SSTAPVAAGH AVRVTARRGL TLTVVPTEAR
QQGESS
|
|---|
| |