| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A4489 |
|---|
| Symbol | |
|---|
| ID | 4006443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 4865900 |
|---|
| End bp | 4867471 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637949657 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_560995 |
|---|
| Protein GI | 91785789 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000880078 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0020567 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCTG ATCGAATCTC GCGCGCGCGG ACGCTTGCGC CACGCGCCCT GACTATTGCT
GTCGCAGCGG CTCTCGCCGG CCTGCTGTCC GCCTGCGTGG TCGGCCCCGA CTACAAGCGG
CCCGCGGCCA CGATCCCGGC GTCATACAAG GAAGCTGCCC CCGGCTGGAA AGTCGCCGAG
CCGGCCGATC AGCACGATCG AGGCGACTGG TGGACCATTT ACGAAGATCC GCAACTCAAC
GCGCTGGAAG ACCGGCTGAA CACCGCGAAC CAGACCGTCG CCCAGTTCGC CGCCGCGTAC
CGTCAGGCGC GCGCGCTGGT TGGCGAAGCG CGTGCAGCGT ATTTCCCCAC CATCGGCGCA
TCGGCGGGCG CCACGCGTTC CGGCAACGGC TCGTCGTCGA GTCGCAGCTC GACTGCCACG
ACGAGCCGCT CCGGCATCAG CAATAGTTTC AACGTACAAC TCGACGCAAG CTGGGAGCCG
GACCTGTGGG GTTCGGTCAC CCGCTCGGTC AACTCGCAGA AGGCCGGCCA GCAAAGCGCC
GCGGCGGACC TCGCGAACGC GCGGCTGTCG GCGCAAGCCA CGCTTGCCCA GACCTATTTC
TCGCTGCGCG CGCTCGATTC GACTCAGAAA TTACTCGACG ACACCGTCGC GGCTTACCAA
CGCTCGCTGC AACTCACGCA GAACCAGTAC GCGGCCGGCG TCGCCGCGCG CTCCGACGTG
ATCCAGGCGC AAACGCAATT GCAGTCGGCC CAGGCAGCCG CGATCGACAA CGGCGTCCAG
CGCGCCCAGG ACGAGCACGC GATCGCCGTA CTGGTCGGCG AACCCGCCTC CACCTTCTCG
ATTCCGCCGA TGCCGCTAAC GGCCACGCCG CCCGCCGTGC CGGCGCAAAT GCCGTCGGCG
CTGCTCGAAC GGCGGCCGGA CATCGCGTCG GCGGAACGCA AGGCCGCCGC GGCTAACGAA
CAGATCGGCG TAGCCATCGC CGCTTTTTTC CCGTCGCTGA CCCTGTCCGC TTCCGGCGGC
TTCGAAAATT CAGTGTTCTC GCAATTGCTG ACCGCGCCGT CGCGCTTCTG GACGCTCGGC
CCGCAACTCG CCGCAACGCT CTTCGACGCC GGTCTGCGCC AGGCCCAGAC CGACGCCGCC
CGAGCCGCCT ACGACGGCGA CGTCGCGAGC TACCGTCAAA CGGTGCTGGC CGCATTCCAG
GACGTCGAGG ACAATCTCGC ATCACAGCGC ATCCTCGAGC AGGAAATCGT CGTGCAGCGG
CAAGCGGTGG ATTCGGCGCG TCAGGCGCTG GCCATCGTCA CGAACGAGTA CAAGGCGGGC
ACGGTCGGCT ACGTCAACGT GCTAACCGCG CAAACCACCG CCTTCACGGC TGAGCAGAAA
CTGGAGAACA TCGCCGGGCA GCGGATGGTG TCGTCGGTAG GTCTGGTGAA GGCGCTGGGC
GGCGGCTGGG ACGCGTCGCA GATGAATCGC GAAACGGGCG ATGTGGCCGC GCCAGCGCCG
CTGCCGGCAT CAGCGGCTGC GCCGGTCGCG CAAAACGGGG CGACGCCGCC TTCGCAGATG
CACAACGAAT AG
|
|---|
| Protein sequence | MQSDRISRAR TLAPRALTIA VAAALAGLLS ACVVGPDYKR PAATIPASYK EAAPGWKVAE
PADQHDRGDW WTIYEDPQLN ALEDRLNTAN QTVAQFAAAY RQARALVGEA RAAYFPTIGA
SAGATRSGNG SSSSRSSTAT TSRSGISNSF NVQLDASWEP DLWGSVTRSV NSQKAGQQSA
AADLANARLS AQATLAQTYF SLRALDSTQK LLDDTVAAYQ RSLQLTQNQY AAGVAARSDV
IQAQTQLQSA QAAAIDNGVQ RAQDEHAIAV LVGEPASTFS IPPMPLTATP PAVPAQMPSA
LLERRPDIAS AERKAAAANE QIGVAIAAFF PSLTLSASGG FENSVFSQLL TAPSRFWTLG
PQLAATLFDA GLRQAQTDAA RAAYDGDVAS YRQTVLAAFQ DVEDNLASQR ILEQEIVVQR
QAVDSARQAL AIVTNEYKAG TVGYVNVLTA QTTAFTAEQK LENIAGQRMV SSVGLVKALG
GGWDASQMNR ETGDVAAPAP LPASAAAPVA QNGATPPSQM HNE
|
|---|
| |