| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A3218 |
|---|
| Symbol | |
|---|
| ID | 4003085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | + |
|---|
| Start bp | 1377270 |
|---|
| End bp | 1379420 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637946417 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_557814 |
|---|
| Protein GI | 91782608 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.634558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGT TCAATAAGAT CGTCAAAGAA TTTCAGTGGG GACAACATAA GGTTCGCCTC
GAAACCGGCG AAATCGCTCG TCAGGCAAGC GGCGCCGTGA TCGTCGACGT CGAAGATACC
GTGGTGCTGG CCACCGTGGT CGGCGCCAGG ACGGCCAAGC CGGGTCAGGA CTTTTTCCCG
CTGACCGTCG ACTACCTCGA AAAGACTTAC GCAGCCGGCA AGATTCCGGG TGGCTTCTTC
CGCCGCGAAG GCCGTCCGTC GGAAGGCGAA ACGCTGATCT CGCGCCTGAT CGACCGTCCG
CTGCGTCCGC TGTTCCCGGA AGGCTTCTAC AACGAAGTCC AGGTCGTGAT CCACGTCCTT
TCGCTGAACC CCGAAATCCC CGCTGACATT CCCGCGCTGA TCGGCGCGTC GGCGGCGCTC
GCCGTGTCCG GTCTGCCGTT CAACGGCCCG GTCGGCGCAG CACGCGTGGC CTACATCAAC
AACGAATACG TGTTGAACCC GACGCGTCCG CAAATGAAGG AATCGGCGCT CGACCTGATC
GTGGCCGGTA CGGAACGCGC GGTGCTGATG GTGGAATCGG AAGCGCAGCA ACTGAGCGAA
GAAGTGATGC TCGGCGGCGT GGTGTTCGGT CACGAACAGA TGCAGATCGC GATCGACGCG
ATCCACGATC TGGTCCGCGA AGGCGGCAAG CCGGAATGGG ATTGGCAGCC GGCGGCGAAG
AACGAGCCGT TGATCGCCCG CGTAACGGAA CTGGCGCAAG CCGATCTGCT CGCCGCTTAT
CAATTGCGCG ACAAGCAGGC TCGTTCGGCC AAGCTGAAGG AAATCTACGC AGCCACGTCG
GCAAAGCTGG AAGAAGACGC GGCAGCAGGC GGCACGGTAG CGGCCGACAA GGCAACTGTC
GGCAACGTGC TGTTCGACAT CGAAGCGAAG ATCGTCCGTA CGCAGATCCT GAACGGCGAA
CCGCGTATCG ACGGGCGCGA CACGCGTACC GTGCGCCCGA TCGAAATCCG TACCGGCGTG
CTGCCGCGTA CGCACGGTTC GGCACTCTTC ACGCGCGGCG AAACGCAGGC GCTGGTGGTG
GCCACGCTGG GCACGAAGGG CGACGAGCAG AACATCGACG CGCTCGAAGG CGAATACCGC
GAACGCTTCA TGCTCCACTA CAACATGCCG CCGTTCGCGA CCGGCGAAAC GGGCCGCGTC
GGTTCGCCGA AGCGCCGTGA AATCGGTCAC GGCCGTCTGG CCAAGCGCGC GCTGGCCGCG
TGCCTGCCGA GCGCGGACGA GTTCGGCTAC TCGATCCGCG TCGTGTCGGA AATCACGGAA
TCGAACGGTT CCTCGTCGAT GGCTTCGGTG TGCGGCGGCT GCCTCGCGCT GATGGACGCC
GGCGTGCCGA TGAAGGCGCA CGTCGCCGGC ATCGCAATGG GCCTGATCCT GGAAGGCAAC
AAGTTTGCCG TGCTGACCGA CATCCTCGGC GACGAAGATC ACCTCGGCGA CATGGACTTC
AAGGTGGCGG GCACCGAGCA AGGCGTGACC GCGCTGCAAA TGGACATCAA GATCCAGGGC
ATCACCAGGG AAATCATGCA GGTCGCCCTC GCGCAAGCCA AGGAAGGCCG TTTGCACATC
CTCGGCAAGA TGACCTCGGC TGTCTCGGGC GCGAACACGG TGCTGTCGGA CTACGCACCG
CGCATGATCA CCATCAAGAT CAATCCGGAA AAAATCCGCG ACGTGATCGG CAAGGGTGGT
TCGGTGATCC GCGCGCTGAC CGAAGAAACC GGCACGACGA TCGATATTTC GGACGACGGC
GTCGTCACCA TCGCCAGCAC GAGCAGTGAA GGCATGGCGG AAGCGAAGAA GCGTATCGAG
AACATCACGC TGGAAGTCGA AGTGGGTCAG GTGTACGAAG GCACCGTGCT CAAGCTGCTC
GATTTCGGCG CGATCGTGAA CATCCTGCCG GGCAAGGACG GTCTGCTGCA CATTTCCGAA
ATCGCCAACG AGCGTATCAA GGACATCAAC GACTATCTGA AAGATGGCCA GCAGGTGAAG
GTCAAGGTCA TCCAGACGGA CGAAAAGGGC CGCGTGCGTT TGTCGGCCAA GGCGTTGCTG
AACGACGCCG CGAACGGCGC GCCGCAAGGC GAGCCGACGC CGCAGCAGTA A
|
|---|
| Protein sequence | MTMFNKIVKE FQWGQHKVRL ETGEIARQAS GAVIVDVEDT VVLATVVGAR TAKPGQDFFP
LTVDYLEKTY AAGKIPGGFF RREGRPSEGE TLISRLIDRP LRPLFPEGFY NEVQVVIHVL
SLNPEIPADI PALIGASAAL AVSGLPFNGP VGAARVAYIN NEYVLNPTRP QMKESALDLI
VAGTERAVLM VESEAQQLSE EVMLGGVVFG HEQMQIAIDA IHDLVREGGK PEWDWQPAAK
NEPLIARVTE LAQADLLAAY QLRDKQARSA KLKEIYAATS AKLEEDAAAG GTVAADKATV
GNVLFDIEAK IVRTQILNGE PRIDGRDTRT VRPIEIRTGV LPRTHGSALF TRGETQALVV
ATLGTKGDEQ NIDALEGEYR ERFMLHYNMP PFATGETGRV GSPKRREIGH GRLAKRALAA
CLPSADEFGY SIRVVSEITE SNGSSSMASV CGGCLALMDA GVPMKAHVAG IAMGLILEGN
KFAVLTDILG DEDHLGDMDF KVAGTEQGVT ALQMDIKIQG ITREIMQVAL AQAKEGRLHI
LGKMTSAVSG ANTVLSDYAP RMITIKINPE KIRDVIGKGG SVIRALTEET GTTIDISDDG
VVTIASTSSE GMAEAKKRIE NITLEVEVGQ VYEGTVLKLL DFGAIVNILP GKDGLLHISE
IANERIKDIN DYLKDGQQVK VKVIQTDEKG RVRLSAKALL NDAANGAPQG EPTPQQ
|
|---|
| |