| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A2647 |
|---|
| Symbol | |
|---|
| ID | 4005590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | + |
|---|
| Start bp | 2003837 |
|---|
| End bp | 2005567 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637946974 |
|---|
| Product | putative Type IV secretory pathway protein VirD4 |
|---|
| Protein accession | YP_558364 |
|---|
| Protein GI | 91783158 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.452126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGC GCGCACACGT TGACACCACA CCTGCGATCG TCGTTGGAGT ATGGCGCGGG
CGTTACCTGC GCTTTACCGG CCAGCAGTTT GTGCTGATGG CTGCGCCCGC CCGTTCGGGT
AAGGGCGTCG GCATTGTGAT TCCGAATCTG CTCAGCTTTC CCGATTCGGT GGTGGTGCTC
GATATCAAGC AGGAAAACTA CGCCGTTACG GCTGGCTTCC GGCGGGCACA CGGGCAGGAC
GTCTATCTCT TCAACCCGTT TGCCGAAGAC GGCCGCACGC ATCGCTATAA CCCGCTGTCG
GCGATCTCGG ATGGCCTGTT TCGGGTCGGC GACATTCTCG CAATCGGCTA TGCCTTGTAT
CCGTCGGGCG GCCACGACGA TTTCTGGAAA GACCAGGCGA GAAACCTGTT CCTCGGCATC
GTGTTGCTGC TGTGCGAATG GCGTGATGCG CGCCGGGCGG CCAAGGGCGA GTCGATTCCC
AACTACCCGG TCACGATGGG TGAGGTGCTG CGGCAGTCGT CGGGCAATGG CATGCCGGTG
AAGACCTGGC TTCAGCGCGC ACTGGTCCAG CATCGCGACC TGCTGTCGGG ATCGTGCGTC
GACGCGATGA ACCGTTTCCT GTCGAACGAC GACAAGGTGC TGGCCAGTGT ACTGGCGACG
TTCAACGCGC CGCTGACGAT CTGGGCCAAT CCGGTTGTCG ATGCGGCGAC GAGTGCGAAC
GATTTCGACC TGCGGGATGT GCGCCGCCGC CGCATGTCGG TCTATATCGG CATCACACCG
GACCATCTGT CGGAAGCGGC CCTGCTCGTC AATCTCGTGT TCTCGCAGCT CGTCAACCTG
AACACGAAGC AATTGCCCGA AGCCGATCCG GCGCTGAAAT TCCAGTGCCT GGTGTTGCTC
GACGAGATGA CCTCGATCGG CAAGATCCAG ATCATCGCGC GCGCCGTCGC CTATATGGCC
GGCTACAACC TGCGCCTGCT GTCGATCGTC CAGTCGATCG CGCAGCTCGA ATCGGTGTAC
GGGCGCGCCG ATGCCCGCAC CTTCATTACG AACCACGCGA TGCAGATCCT CTATGCGCCG
CGCGAGCAGA AGGATGCGAA CGATTACTCG GAAATGCTCG GCACGTTGAC CGACCAGTCG
CGCAGCGTCA GCCGTTCAAA TGCGATTTTC GGTGGCCGGA GTGGATCGAG TGAGAGTGTG
TCCGAGCAGC GCCGCCCGTT GCTATTGCCG CAGGAACTGA AGGAGCTGGG GCGCGAGAAG
GAAATCATCG TGCTCGAGAA CACTCGTCCG ATTCTGGCCG ACAAGATCTG CTACTGGCGC
GATCCCGAGT TTTCCTCTCG CGTGATGACC GCGCCCTCTG TACCGGCCAT GAACCTGGCC
CATTTCAGCG CCGTGGTCGA ACGCCGGCTG CGCTATCTGC GTTCCGACGA AATCGATCCG
GAAGGTGCCG GGCTGATCCA TCTGCCGCCC GAGTATCTGG AAGTGCTGCA GGCGTGGGAT
CCCCGTGACC TGCCGCCGAA CCTCGCCGAT ATCAGCGAGG ACGAGGCTGT CGCCTACGTG
GAGCGGCATT TCGTGCTGCT GGGCATTCCG GCCAGGAAGG TCGAGCGCGT AGGGCGTCGT
CTGGGCGCTG ACGATCTTGA CGTGGCGGAG CTCGATTTCG TTGAACCGGC GCAGCGCGCG
GCCCCGAATG GTTCGCAAGC CGGCTCACAG TCGATGGGAG CCCTGCAATG A
|
|---|
| Protein sequence | MTMRAHVDTT PAIVVGVWRG RYLRFTGQQF VLMAAPARSG KGVGIVIPNL LSFPDSVVVL
DIKQENYAVT AGFRRAHGQD VYLFNPFAED GRTHRYNPLS AISDGLFRVG DILAIGYALY
PSGGHDDFWK DQARNLFLGI VLLLCEWRDA RRAAKGESIP NYPVTMGEVL RQSSGNGMPV
KTWLQRALVQ HRDLLSGSCV DAMNRFLSND DKVLASVLAT FNAPLTIWAN PVVDAATSAN
DFDLRDVRRR RMSVYIGITP DHLSEAALLV NLVFSQLVNL NTKQLPEADP ALKFQCLVLL
DEMTSIGKIQ IIARAVAYMA GYNLRLLSIV QSIAQLESVY GRADARTFIT NHAMQILYAP
REQKDANDYS EMLGTLTDQS RSVSRSNAIF GGRSGSSESV SEQRRPLLLP QELKELGREK
EIIVLENTRP ILADKICYWR DPEFSSRVMT APSVPAMNLA HFSAVVERRL RYLRSDEIDP
EGAGLIHLPP EYLEVLQAWD PRDLPPNLAD ISEDEAVAYV ERHFVLLGIP ARKVERVGRR
LGADDLDVAE LDFVEPAQRA APNGSQAGSQ SMGALQ
|
|---|
| |