| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A1335 |
|---|
| Symbol | valS |
|---|
| ID | 4005477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | + |
|---|
| Start bp | 3447628 |
|---|
| End bp | 3450507 |
|---|
| Gene Length | 2880 bp |
|---|
| Protein Length | 959 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637948299 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_559670 |
|---|
| Protein GI | 91784464 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.754534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA CCCCGAGCGA CACCACCTCC ACGCTTGCCA AAAGCTTCGA GCCCCAGACC
ATCGAAGCCC ACTGGGGCCC CGAATGGGAA AAGCGCGCTT ACGCGACGCC CGTCATCCAG
GAAAACCGGA AAGACTTCTC CATCCAGCTG CCGCCGCCGA ACGTCACGGG CACCCTCCAC
ATGGGCCACG CGTTCAACCA GACGATCATG GACGGCCTCA CCCGCTACCA CCGCATGCTC
GGCGAAAACA CCCTGTGGGT GCCGGGCACG GACCACGCGG GTATCGCCAC GCAGATCGTG
GTCGAGCGGC AACTGGACGC GCAAGGCGTC TCGCGCCACG ACCTCGGCCG CGAAAAGTTC
GTCGAACGCG TGTGGGAATG GAAGCAGCAA TCCGGCTCGA CCATCACGAA CCAGGTGCGG
CGCCTCGGCG CCTCGATCGA CTGGTCGCGC GAATACTTCA CGATGGACGA CAAGATGTCG
GCCGCCGTGC GCGACGTGTT CGTCCGCCTG TATGAACAAG GCCTGATCTA TCGCGGCAAG
CGCCTCGTGA ACTGGGACCC GGCGCTGCTC ACCGCCGTCT CCGACCTCGA AGTGGTCAGC
GAGGAAGAAA ACGGCTCGCT CTGGCACATC CAGTACCCGC TCACGGACGG CTCGGGCCAT
CTGACGGTCG CCACCACGCG TCCGGAAACC ATGCTCGGCG ACACCGCCGT GATGGTCCAC
CCGGAAGACG GGCGCTACGC GCATCTGATC GGCAAGACAG TCACGCTGCC GCTGTCGGGC
CGAGAAGTGC CGATCATCGC GGATGATTAT GTAGACCGCG AATTCGGCAC CGGCGTCGTC
AAGGTCACGC CCGCGCACGA TTTCAACGAC TACCAGGTCG GCCTGCGCCA CAAGCTGCCG
CAAATCGAAA TCCTCACGCT CGACGCGAAG ATCAACGACA ACGCGCCGGA GCAATACCGC
GGCCTCGACC GCTTCGAAGC CCGCAAGCAG GTGGTGGCCG ACCTCGAAGC GCTCGGCGTG
CTCGAATCGG TCAAGCCGCA CAAGCTGATG GTGCCGCGCG GCGACCGCAC GGGCGTCGTG
ATCGAGCCGA TGCTGACGGA CCAATGGTTC GTCGCCATGA GCAAGCCGGC GCCGGAAGGC
ACCTTCAATC CGGGCAAATC GATCGCCGAA ACGGCACTCG ACGTGGTGCG CAGCGGCGAA
ATCAGGTTCG TGCCGGAAAA CTGGACCACC ACTTACTACC AGTGGCTCGA GAACATTCAG
GACTGGTGCA TCTCGCGCCA GCTCTGGTGG GGTCATCAGA TCCCGGCGTG GTACGGCGAA
AACGGCGAAA TCTTCGTGGC GAAAACCGAA GAAGACGCGC GCGCCAAGGC CACGGCAGCC
GGCTACACGG GCGCCCTCAA GCGCGACGAA GACGTGCTGG ACACGTGGTT CTCGTCTGCT
CTGGTGCCGT TCTCGTCGCT CGGCTGGCCG AATGAAACGC TGGAGCTCAA GCACTTCCTG
CCTTCTTCGG TGCTGGTCAC CGGCTTCGAC ATCATCTTCT TCTGGGTCGC GCGCATGGTC
ATGATGACCA CGCACTTCAC CGGCAAGGTG CCGTTCGACA CGGTGTACGT GCACGGTCTC
GTGCGCGACG CCGAAGGCCA GAAAATGTCG AAGAGCAAGG GCAATACGCT CGACCCGATC
GATATCGTCG ACGGCATCGA CCTCGACGCG CTGGTCGCCA AGCGCACCAC CGGCCTGATG
AATCCGAAGC AGGCCGCGTC GATCGAAAAG AAGACCCGCA AGGAATTCCC CGACGGCATT
CCGGCATTCG GCACCGACGC ATTGCGCTTC ACGATGGCCT CGATGGCCAC GCTCGGACGC
AACGTCAACT TCGATCTCGC GCGCTGCGAA GGCTACCGCA ACTTCTGCAA CAAGCTGTGG
AATGCCACCC GTTTCGTGCT GATGAACTGC GAAGGCCACG ATTGCGGCTT CGGCAAACCG
GAACAATGCG GCGAATGCGG TCCGGACGGA CACCTGCATT TTTCGCAGGC CGACTTCTGG
ATCGTCTCGC GTCTGCAGCG CGTGGAAGCG GAAATCGCCA GGGGCTTCGC CGACTATCGT
TTTGACAATG TGGCCAACGC CCTATACAAG TTCGTATGGG ACGAATACTG TGACTGGTAT
CTCGAACTCG CCAAGGTTCA GATCCAGACG GGTCAGCCGA ACCAGCAGCG CGCAACACGC
CGCACGCTGC TGCGCGTGCT CGAGACGGTG CTGCGTCTGG CGCATCCGGT GATCCCGTTC
ATCACCGAAG CGCTGTGGCA GAAAGTAGCG CCGTTGGCCG GGCGTTATCC CGAAGGCAAA
GCCGAGGGCG AAGCGTCCAT CATGGTGCAG CCGTACCCCG TTGCCGAACC GTCGAAGATC
GATGAAGACG CGGAGCAATG GGCGGCCGAC CTGAAAGCGG TGATCGATGC GTGCCGGAAT
CTGCGCGGCG AAATGAACCT GTCGCCGGCA GTCAAGGTGC CGTTGCTCGC TGCCGGCAAC
GCGGAGCGTC TGCGCACGTT TGCTCCGTAC GCACAGGCAT TGGCCCGTTT GTCCGAAGTG
CAGATCATTG CCGACGAGGC AGCGCTGGAT GCGCAGGCGG ATGGCGCGCC AATTGCTATC
GTAGGGAATG ACAAGCTCGT GCTGAAGGTG GAAATCGACG TGGCAGTCGA GCGCGAGCGG
TTGTCGAAGG AGATTGCGCG GTTGAGCACG GAAATCATCA AGTGCAACGG CAAATTGCAG
AATGAAAGTT TCGTTGCAAA GGCGCCGCCG GCAGTCGTTG AGCAGGAGCA GAAAAGACTG
GCTGAATTCG AAGCCACCCT GGGCAAGCTG AAGGCCCAGT TGGTGCGTTT GCCGGTCTGA
|
|---|
| Protein sequence | MSETPSDTTS TLAKSFEPQT IEAHWGPEWE KRAYATPVIQ ENRKDFSIQL PPPNVTGTLH
MGHAFNQTIM DGLTRYHRML GENTLWVPGT DHAGIATQIV VERQLDAQGV SRHDLGREKF
VERVWEWKQQ SGSTITNQVR RLGASIDWSR EYFTMDDKMS AAVRDVFVRL YEQGLIYRGK
RLVNWDPALL TAVSDLEVVS EEENGSLWHI QYPLTDGSGH LTVATTRPET MLGDTAVMVH
PEDGRYAHLI GKTVTLPLSG REVPIIADDY VDREFGTGVV KVTPAHDFND YQVGLRHKLP
QIEILTLDAK INDNAPEQYR GLDRFEARKQ VVADLEALGV LESVKPHKLM VPRGDRTGVV
IEPMLTDQWF VAMSKPAPEG TFNPGKSIAE TALDVVRSGE IRFVPENWTT TYYQWLENIQ
DWCISRQLWW GHQIPAWYGE NGEIFVAKTE EDARAKATAA GYTGALKRDE DVLDTWFSSA
LVPFSSLGWP NETLELKHFL PSSVLVTGFD IIFFWVARMV MMTTHFTGKV PFDTVYVHGL
VRDAEGQKMS KSKGNTLDPI DIVDGIDLDA LVAKRTTGLM NPKQAASIEK KTRKEFPDGI
PAFGTDALRF TMASMATLGR NVNFDLARCE GYRNFCNKLW NATRFVLMNC EGHDCGFGKP
EQCGECGPDG HLHFSQADFW IVSRLQRVEA EIARGFADYR FDNVANALYK FVWDEYCDWY
LELAKVQIQT GQPNQQRATR RTLLRVLETV LRLAHPVIPF ITEALWQKVA PLAGRYPEGK
AEGEASIMVQ PYPVAEPSKI DEDAEQWAAD LKAVIDACRN LRGEMNLSPA VKVPLLAAGN
AERLRTFAPY AQALARLSEV QIIADEAALD AQADGAPIAI VGNDKLVLKV EIDVAVERER
LSKEIARLST EIIKCNGKLQ NESFVAKAPP AVVEQEQKRL AEFEATLGKL KAQLVRLPV
|
|---|
| |