| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A0621 |
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| Symbol | |
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| ID | 4005790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | + |
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| Start bp | 4196027 |
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| End bp | 4197085 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637949010 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_560365 |
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| Protein GI | 91785159 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.267522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.779049 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACTC TCGGCTCCCA CAATCTGCGT AATAACCTGT TCGTCGCGCC CATGGCCGGC
GTGACCGACC GGCCGTTCCG GCAGCTGTGC AAACGGCTGG GCGCGGGCTA CGCGGTGTCG
GAAATGGTCG CCTCGAACGC GCAGCTGTGG AAAAGCGAGA AGACCATGCG CCGCGCCAAT
CACGCGGGCG AGGTCGAACC GATCGCCGTG CAGATCGCCG GCGCCGATCC GGCCATGATG
GCCGAAGCGG CCCGCTACAA CGTGGCAAAC GGCGCGCAGA TCATCGACAT CAACATGGGC
TGCCCGGCCA AGAAGGTGTG CAACGTCGCG GCGGGTTCGG CCCTGTTGCA GAACGAGCCG
CTGGTGCAGC GCATCGTCGA GGCGGTGGTC GGCGCGGTGG GCGTCGGGCC CGACGCGGTG
CCCGTCACGC TCAAGATCCG CACCGGCTGG AATCGCGAGA ACCGGAACGC GCTGAACGTC
GCGCGTCTGG CCGAGTCGGC CGGTATTTCG ATGCTCACCG TGCATGGCCG CACGCGCGCC
GACCTGTATC ACGGCGAGGC CGAATACGAC ACCATCGCCG CGGTGAAAGC AGCCGTGCGC
ATTCCGGTGG TCGCCAACGG CGACATCACA TCGCCGCAAA AAGCGCGCGA GGTGTTGGCC
GCCACCGGCG CCGACGCGCT CATGATCGGC CGTGCCGCGC AAGGGCGCCC GTGGCTGTTC
CGCGAGATCG GCCATTTCCT GCAAACGGGT GAGTTGCTGC CGCCGCCGCG CATCGACGAA
ATCCAGCAGG TGATGAACGA GCATCTCGAA GACCACTACG CGTTCTACGG CGAATTTACG
GGTGTGCGCA CTGCGCGCAA GCACATCGGC TGGTACACTC GCGGCCTTTC TGGCGCCAAC
GTGTTCCGGC ATCGCATGAA TACGCTGGAC ACCACACGCG AACAACTCCT CGCCGTCAAC
GAGTTCTTCG ACGCACAGAA GGCGATCTCC GACCGCCTCG TCTACGTCGA CGAAACGCTC
GGCACGGACG AGGACCCAAC CGACCGACTG GCAGCATGA
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| Protein sequence | MPTLGSHNLR NNLFVAPMAG VTDRPFRQLC KRLGAGYAVS EMVASNAQLW KSEKTMRRAN
HAGEVEPIAV QIAGADPAMM AEAARYNVAN GAQIIDINMG CPAKKVCNVA AGSALLQNEP
LVQRIVEAVV GAVGVGPDAV PVTLKIRTGW NRENRNALNV ARLAESAGIS MLTVHGRTRA
DLYHGEAEYD TIAAVKAAVR IPVVANGDIT SPQKAREVLA ATGADALMIG RAAQGRPWLF
REIGHFLQTG ELLPPPRIDE IQQVMNEHLE DHYAFYGEFT GVRTARKHIG WYTRGLSGAN
VFRHRMNTLD TTREQLLAVN EFFDAQKAIS DRLVYVDETL GTDEDPTDRL AA
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