| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A0320 |
|---|
| Symbol | rpsC |
|---|
| ID | 4006098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 4510353 |
|---|
| End bp | 4511159 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637949317 |
|---|
| Product | 30S ribosomal protein S3 |
|---|
| Protein accession | YP_560665 |
|---|
| Protein GI | 91785459 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0092] Ribosomal protein S3 |
|---|
| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0000941491 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00272793 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAGA AAATTCATCC GACTGGCTTC CGTTTGGCCG TCAGCCGCAA TTGGGCGTCG
CGTTGGTACG CGAACAACAA CAATTTCGCG GCGATGTTGC AGGAAGACAT CGGTGTTCGT
GAATACCTGA AGAAGAAGCT GAAGAACGCT TCGGTTGGTC GTGTCGTTAT CGAGCGTCCG
GCGAAAAACG CGCGCATCAC GATTTATAGT TCGCGTCCGG GTGTGGTCAT CGGTAAGAAG
GGCGAAGATA TCGAGCTGCT GAAGTCGGAA CTGCAACGCC GCATGGGCGT TCCGGTCCAC
GTCAACATCG AAGAAATCCG CAAGCCGGAA ACCGACGCGC AACTGATCGC GGATTCGATC
ACGCAGCAGC TCGAGCGCCG GATCATGTTC CGCCGCGCAA TGAAACGTGC GATGCAAAAC
GCAATGCGTC TGGGTGCTCA GGGCATCAAG ATCATGAGCG CTGGCCGCCT GAACGGTATC
GAAATCGCCC GTACGGAATG GTATCGCGAA GGTCGCGTGC CGCTTCATAC GCTGCGTGCT
GATATCGACT ACGCAACGTC GGAAGCAAAG ACGACGTACG GCATCATCGG CGTGAAGGTG
TGGGTCTACA AGGGCGACAC GCTCGGCCGC AACGACGCAC CGGTGGTTGA AGAAGTCGCC
GAAGAAAAGC GTCCGCGCCG CAACGCACGT CCGGGTGGCG ATCGTCGTCC GCGTCGCGAT
GGTGAAGGTG GTGGCCCGGC AGGTGCTCGC CGTGGCGCTC CTCGTCGTGC TGGCGGTGCC
GGCGACGGCG GGAAGACTGG AGAATAA
|
|---|
| Protein sequence | MGQKIHPTGF RLAVSRNWAS RWYANNNNFA AMLQEDIGVR EYLKKKLKNA SVGRVVIERP
AKNARITIYS SRPGVVIGKK GEDIELLKSE LQRRMGVPVH VNIEEIRKPE TDAQLIADSI
TQQLERRIMF RRAMKRAMQN AMRLGAQGIK IMSAGRLNGI EIARTEWYRE GRVPLHTLRA
DIDYATSEAK TTYGIIGVKV WVYKGDTLGR NDAPVVEEVA EEKRPRRNAR PGGDRRPRRD
GEGGGPAGAR RGAPRRAGGA GDGGKTGE
|
|---|
| |