| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5443 |
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| Symbol | |
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| ID | 4016402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007950 |
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| Strand | - |
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| Start bp | 195425 |
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| End bp | 196534 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637945063 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_552195 |
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| Protein GI | 91791245 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00200172 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.203464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCACG ATATTCCTAC AGATACCGCT GCCGCCGCGG CCACAATTCG AGCAATTCTC
ACCGTGGTCG ACAGCAAAAT GCCTTTTAGC GACATTCTTG TGGCTGCTGA TGAACCCGTT
ATGCTTCGCA ACGCCAGCGG ATGGACCCCG TTCCCTGACA GTGCGTATTC CAATGACGAT
ATCGAGTTCA TTCTGACTTC CATGGAGCCA GACTGGTCGA CCCACCTTAT TAATGGTGGC
TTCAGCCGTC CGTATCTGGT TGGCGATTGG CGCTTGCGCG TGACTGCGTA CTTGGCCGGC
CGCGGTAATA AGAAAATGCT CTCCATACGG AGAACACCTG TAGTCCCCAT GCCGCTTGAA
AAGACGGGTC TTTCCCCGTC CGTGAAGTTG ATGGTGGAGA ACCCTAAGGG TTTGATCTTG
CTTTCCGGGC CCACTGGCTC CGGCAAGACA ACCACCATGG CTGCGCTCAT CGACTACATC
AACACCACTA GAAACGCTCA TGTGGTTACG ATCGAAGATC CGATTGAATA CGAGTTCGTT
CGCAACAATT CGGTTTTTTC ACAGCGCGAA GTTGGTGTCG ATACACCATC TTTTTTTGAG
GGCGTTCGTG GGGCAATGCG TCAACGGCCG GACGTGATCG TCATCGGTGA AATTCGTGAC
CGAGATACAG CTGAAAATGC AATTCTCGCC GGTGAATCTG GACATCTCGT GATAGCAACC
CTGCACGCCA GTTCTGCCTA TGGGGCAGTG CAGAAACTGG TCTCTTTTTT CCCTGGCGAA
GAATTGGCCA GGACTGCCAG CCTGGCCACC TCCTTAATGG GCGTTGTGCA CCATGCAATC
GTCCCCACGG TCGATAAATT GACCGGCGTA TTGGCCTCCG AGCTCCTGTT CAACCATCAT
CAAGCGTTTT CAACAATCCT TGCCGATTCG CACAAAGTAC AGATGGAGCT TGAGGATCCG
AAAGACAAGA TTTCCCGTTC CATGGCCGCA AGCCTGGTTG ATTTGGTCAA GGCGGCAAAG
ATTTCCAAAT CTGAAGCGTT GAGAAGCGTT GCGGGGCAGG GTGCGGTCTG GAAGCAAGTG
AACGAGCGTT TGAATACCGT AAAGGCGTGA
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| Protein sequence | MDHDIPTDTA AAAATIRAIL TVVDSKMPFS DILVAADEPV MLRNASGWTP FPDSAYSNDD
IEFILTSMEP DWSTHLINGG FSRPYLVGDW RLRVTAYLAG RGNKKMLSIR RTPVVPMPLE
KTGLSPSVKL MVENPKGLIL LSGPTGSGKT TTMAALIDYI NTTRNAHVVT IEDPIEYEFV
RNNSVFSQRE VGVDTPSFFE GVRGAMRQRP DVIVIGEIRD RDTAENAILA GESGHLVIAT
LHASSAYGAV QKLVSFFPGE ELARTASLAT SLMGVVHHAI VPTVDKLTGV LASELLFNHH
QAFSTILADS HKVQMELEDP KDKISRSMAA SLVDLVKAAK ISKSEALRSV AGQGAVWKQV
NERLNTVKA
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