| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5233 |
|---|
| Symbol | |
|---|
| ID | 4015960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007949 |
|---|
| Strand | + |
|---|
| Start bp | 343201 |
|---|
| End bp | 343812 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637944860 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_551992 |
|---|
| Protein GI | 91791041 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00145184 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGAAAT TTGGTATCTC TAGGGTACTC GCCACTTCGG TGGCGGCCTT TCTTTCCATC
GGCGCCACAC AGTCGGCGTT CGCACAGGAT GCCTTTCGCG ACGTGGCAGT AGCGCAAGGC
CCGAGACAAC CTGATGACTG TGTAACCCAG GCGGCTACCT ATCATTCGGT GAGCCCTTGG
GTCCTTCGCG CCATCATCCA AGTGGAATCC AGCTTCAACC CCAATGCTTT AAATAAAAAC
AATAATGGCA CGGTAGATGT TGGGATCGCA CAGATTAACT CCATGCACTT CAAAGAGCTG
GGTAAGTATG GCATTGCGCA ACGCGATTTG ATGAATGGTT GCATTTCAAG CTACGTTGCA
GCGTGGCACC TGAAAAAGCA GATCAATGCC TATGGGAACA CGTGGTTTGC CGTTGGCGCC
TATCACTCGG CTACCCCGTG CTTTAACCAG CGTTACACGG GTCTGGTCTG GAATGTCCTT
CTCAAATGGG GCGTGGTCAA CGGCCCCAGG GCAAAACCAG TTGCCATGTC GGCCTGCGCC
TCTGCTAAAT CGGGCACCGG GGTTGCCAAA TCCACGCAGG CCAAAGAACC CTCACTGCTC
GCTCTGGATT GA
|
|---|
| Protein sequence | MLKFGISRVL ATSVAAFLSI GATQSAFAQD AFRDVAVAQG PRQPDDCVTQ AATYHSVSPW
VLRAIIQVES SFNPNALNKN NNGTVDVGIA QINSMHFKEL GKYGIAQRDL MNGCISSYVA
AWHLKKQINA YGNTWFAVGA YHSATPCFNQ RYTGLVWNVL LKWGVVNGPR AKPVAMSACA
SAKSGTGVAK STQAKEPSLL ALD
|
|---|
| |