| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4905 |
|---|
| Symbol | |
|---|
| ID | 4012415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 5197186 |
|---|
| End bp | 5198928 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637944547 |
|---|
| Product | protein translocase subunit yidC |
|---|
| Protein accession | YP_551679 |
|---|
| Protein GI | 91790727 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.574462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA TCCGCCGCAC CATTTTGTGG GTGATTTTTG GCTTTTCCAT GGTCCTCCTG
TGGGACCAGT GGCAGGTCTA TAACGGCCAG AAAGCCACTT TCTTCCCGGC GACCACGCAG
AGCGCCAAAG CACCTGCTGC CGCAACATCG GCGCCCGCCG CGTCGGCCTC TTCGGTGCCG
GTTTCGCCGT CCACTGCCAG CGCGGTTCCT GCGGTGCCCG GTTCGGCGCC TGGTGCCGCC
CCCGGTGCTG TGCCCGCAGG TGCGCCGTCC CCCGCAGCCG CTGCGACCCG CGAGCGCGTG
GTGGTGAACA CCGACGTGCT GGCGCTGACC TTTGACAGCG AAGGCGGCAC GCTGGTCCAT
TCGGCTTTCA CCCGCTTCAA GGACATGGCC AACACCGACG CCGGCTTTGT GCTGCTCGAC
GAAAGTACCA ACCGGGTTTA TGTGGCGCAG ACCGGCCTGA TCGCGAGCGG CACGGGCGGC
ACCTTCCCGA CTCACAAAAC CCTGATGACC GTGGTGCCCG GCGAGCGCAG CCTCAAGGAC
GGCCAGAACG AGCTGCAAGT CAAGTTTGAA TCGGCCGACC TCGGCGGCGT CAAGCTGGTC
AAGACCTACA CGCTCAAACG CGGCTCGTAC GACATCGCTG TGCGCCACGA CGTCATCAAC
ACCGGCAGCG CGCCGGTGGC GCCGCAGCTT TACATGCAGC TGGTGCGTGA CGGCAACAAA
CCGCCGGGCG AATCATCGTT CTATTCCACC TTCACCGGCC CGGCCATTTA CACCGAAGCC
AAGAAGTACC AGAAGGTCGA ATTCAAGGAC ATCGAAAACA ACAAGGTCGA TGTGGAAAAA
CAGGCGACCA ACGGCTATGT GGCCATGGTC CAGCACTACT TTGCCGCAGC CTGGATTCTG
GCCGATGGCC TGAAGCGCGA CCTGTTCCTG CGCAAGGTCG ACGCCAACCT GTATGCGGTT
GGCCTGATCA CGCCGCTCGA CAGCATTGCG CCGGGCGCCA CCAAAACCAT CGACTCGAGA
TTGTTTGTCG GCCCGCAGGA AGAGAAAAAG CTGGAAGCGC TCGCCCCCGG CCTGGAGCTG
GTGAAGGACT ATGGCTGGCT GACCATCCTG GCCAAGCCGC TGTACTGGTT GCTCGACAAG
CTGCATGGCT TTCTCCTCAA CTGGGGCTGG TCCATCGTGG CGCTGGTGCT GCTGCTCAAG
ATCGCCTTTT ACTGGCTCAA TGCCAAGGCC TACGCCAGCA TGGCCAAAAT GAAGGCCATC
AACCCCAAGA TCATGGAGAT GCGCGAACGC CTGAAGGACA AGCCGCAGGA AATGCAGCAG
GCGATGATGA AGATCTACCG CGAGGAAAAG GTCAACCCCA TGGGCGGCTG CTTCCCCATC
ATGGTCCAGA TCCCGGTGTT CATTGCGCTC TATTGGGTGC TGCTGTCCAG CGTCGAAATG
CGCAACGCGC CCTGGGTCTT GTGGATCCAT GACCTCTCGG CGCCCGATCC TTTCTTCATC
CTGCCCGTCC TCATGACCCT GACGACCATG CTGCAGACGG CGCTCAACCC CGCGCCGCCG
GATCCGATGC AGGCCAAGCT GATGTGGTTC ATGCCGCTGA TCTTCAGCGT GATGTTCTTC
TTCTTCCCGG CCGGCCTCGT GCTGTACTGG ATCACCAACA ACATCCTGTC CATCGCCCAG
CAGTGGGTGA TCAACACGCG AATGGGTGTA CCGCCGCAGT TCAACCTGCC GAAGTTCAGG
TAA
|
|---|
| Protein sequence | MNDIRRTILW VIFGFSMVLL WDQWQVYNGQ KATFFPATTQ SAKAPAAATS APAASASSVP
VSPSTASAVP AVPGSAPGAA PGAVPAGAPS PAAAATRERV VVNTDVLALT FDSEGGTLVH
SAFTRFKDMA NTDAGFVLLD ESTNRVYVAQ TGLIASGTGG TFPTHKTLMT VVPGERSLKD
GQNELQVKFE SADLGGVKLV KTYTLKRGSY DIAVRHDVIN TGSAPVAPQL YMQLVRDGNK
PPGESSFYST FTGPAIYTEA KKYQKVEFKD IENNKVDVEK QATNGYVAMV QHYFAAAWIL
ADGLKRDLFL RKVDANLYAV GLITPLDSIA PGATKTIDSR LFVGPQEEKK LEALAPGLEL
VKDYGWLTIL AKPLYWLLDK LHGFLLNWGW SIVALVLLLK IAFYWLNAKA YASMAKMKAI
NPKIMEMRER LKDKPQEMQQ AMMKIYREEK VNPMGGCFPI MVQIPVFIAL YWVLLSSVEM
RNAPWVLWIH DLSAPDPFFI LPVLMTLTTM LQTALNPAPP DPMQAKLMWF MPLIFSVMFF
FFPAGLVLYW ITNNILSIAQ QWVINTRMGV PPQFNLPKFR
|
|---|
| |