| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4849 |
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| Symbol | |
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| ID | 4012461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 5134656 |
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| End bp | 5136356 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637944491 |
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| Product | NifA subfamily transcriptional regulator |
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| Protein accession | YP_551623 |
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| Protein GI | 91790671 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.728864 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACCT CTGCCCGCAC ACCGCCCCCT TCAAGCAAAT CGTCCGCAGA CCCCCAGTGG
CGCGCGCAGG AGCTGCTGCT GATGAGCGAG GTCATGCGGC TGGTCGGCAA AAGCCTGGCG
CCCGAGGTGG TGCTGCGGGA AATGCTGCAC CTGATGTCGG AACTGCTGGG GCTGAACCGG
GGCCGCATTG TGCTGGCCGA TTTTGTCGGC GACATTGCGT TGCAGGGCCT GGCTGATCGC
AAACCGGCGA CCCGGGCTGC CGGCGCGCCG GCGCCACAAT CGGCCATTCG TTATGCCTAC
GGCCTGACGC GCGAGGAAAT GGCGCGCGGC CGCTACGGCC CGGGCGAAGG CATCACCGGC
CGGGTGCTGG CCACGGCGCA GCCCATCATC GTGCAGGACA TCGATGCCGA GCCGCAGTTT
CTGGCGCGCT CGGTGGCGCG GGCCCAGCTG CCGCCCGACA CCGTGGCCTT CATTGCGCTG
CCGATCGAGG TCAACCGCGA GGTGATCGGC GTGCTGGCCT GCCACCGCAT CAGGAGCCGC
GACCGGCAGC TCGCCGACGA TGTGGCGGTG CTGAAAATCC TGGCGACACT GGCCGGCCAG
CTGCTGCAGC TGCAGGCGCT GGTGGCGGAA AAAACCCGCG CGCTGCAGGC CAAAAACCAG
CTGCTGACGC GCGCGCTGGA GACCGCCGCC GCCCGCTACG GCATCATCGG CACCTCGCCG
GCGCTGCTGC AGGCACTTGG CGAACTGGAA CGGGTGTCAG AGGCCACCGC CAGCGTGCTG
CTGCTGGGCG AGTCGGGCAC CGGCAAGGAG CTGTTTGCGC GCGCGGTGCA CCTGTCCAGC
CAGCGCCGCG ACCAGCCTTT CATCAAGGTC AATTGCGCGG CGATTCCCGA CACCTTGTTC
GAGTCGGAAC TGTTCGGCTA CGAGCGCGGC GCCTTCACCG GCGCACAGAA CGCCCGCGCC
GGCTGGTTCG AGCAGGCCGA CCGCGGCACG ATATTTCTCG ACGAGATTGG CGAAATGCCA
CTGGCCATGC AGACCAAGCT GCTGCGCACG CTGCAGGAGG GCACCATTGT GCGGCTGGGC
GGCAAGCGCG AAATCCGCGT GGAAGTGCGC GTGGTGGCGG CCACCAACCG CGACCTGGCG
CAGGAGGTGC AGCGCGGCAG CTTCCGGCGC GACCTCTTTT ACCGGCTCAA TGTGATTCCG
ATCCGGCTGC CCTCGCTGCG CGAGCGTCCG CAGGACATTC GCGCGCTGGC CGTGCATTTT
TTAAGCCGCA TCAACCAGGC CAACCAGCGC AACGTGAGCC TGTCGCCGGC GGCCCTGGCC
CGGCTGGAGC AGCACCCCTG GCCCGGCAAC ATCCGCGAAC TGGGCAACGT GATCGAACGG
CTGGTGCTGC TGACCGACAG CGCCATGGTG TCCGCGCCAG AGGTGGAACG TTTTCTGCCG
CCCGAACAGG AGGATGCTGC AGCAGCGGCC CGCCCGCCCG CGTTGGCCTC CGCCGGCCAA
GCCCACGCGC CACCCGGTGC GGCGGCTCCC GCCGTGCGCG AGTACCAGCC CGCCCGGTCG
CACTCGGCCG CGCAATTGCA GCAGGCGCTG CTGGCCCATG GCGGCAACCA GTCGCGCGCC
GCGCAGGCCC TGGGGCTGAC GGTGCGGCAG TTCTCCTACC GGCTGCGCAA GATGGGCCTG
CACAATGTCG ACAATTTGTA G
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| Protein sequence | MATSARTPPP SSKSSADPQW RAQELLLMSE VMRLVGKSLA PEVVLREMLH LMSELLGLNR
GRIVLADFVG DIALQGLADR KPATRAAGAP APQSAIRYAY GLTREEMARG RYGPGEGITG
RVLATAQPII VQDIDAEPQF LARSVARAQL PPDTVAFIAL PIEVNREVIG VLACHRIRSR
DRQLADDVAV LKILATLAGQ LLQLQALVAE KTRALQAKNQ LLTRALETAA ARYGIIGTSP
ALLQALGELE RVSEATASVL LLGESGTGKE LFARAVHLSS QRRDQPFIKV NCAAIPDTLF
ESELFGYERG AFTGAQNARA GWFEQADRGT IFLDEIGEMP LAMQTKLLRT LQEGTIVRLG
GKREIRVEVR VVAATNRDLA QEVQRGSFRR DLFYRLNVIP IRLPSLRERP QDIRALAVHF
LSRINQANQR NVSLSPAALA RLEQHPWPGN IRELGNVIER LVLLTDSAMV SAPEVERFLP
PEQEDAAAAA RPPALASAGQ AHAPPGAAAP AVREYQPARS HSAAQLQQAL LAHGGNQSRA
AQALGLTVRQ FSYRLRKMGL HNVDNL
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