| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4533 |
|---|
| Symbol | |
|---|
| ID | 4012769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4794397 |
|---|
| End bp | 4795227 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637944185 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_551317 |
|---|
| Protein GI | 91790365 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000115279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGG ACGAACACGA TCACCAGAAA GAACATAAAG AACAGCGGGC CGTGCAGTCG
GTCGAGATCG GCGGGCGATT GCTGCTGGCG CTGGCCGAGC ACCCGGGCCC CATGACGCTC
AAGGATCTGG CGGCCAAGGC CGGCCTGCCG GCGTCGCGCG CGCACACTTA TCTGGTGAGT
TTTGGCAGGC TGCGCTTGAT CGAGCAGGAT GCGGTCACGG GCCGCTACGC GCTGGGCGCG
GCGGCGCTGC AGGTGGGCCT GAGCTGCCTG CATCAGCTCG ATCCTCTGAA AGCCGCCACG
CCGATTGCCG AGGCGCTGGC GCTGGCCATC GACCAGACGG TGGCCATCGC GGTGTGGGCC
AATTTCGGCC CGACGATCGT GCGCTATATC GAGGCCAGCC AGCCGCTGCA TGTCAGCATG
CGCATGGGAA CGGTCATGTC CATCCTGGGC ACGGCTACTG GACGGGCCTT TGCCGCCACG
CTGCCCCGGC ATCAACTGGA GCAAGCCATG CAGGGCGCTT TCGGCGATGG CCCACGGCGG
CTCGACCGCA GCGCCGTAAA AGACGTGGCC CAGGAAATCC AGGATATTCA GGCGGAACTG
CGCCAGCATG GCGTGGTGCG CGCCGCAGGT CGTCCGATTC CCGGCGTCAA TGCCTTCAGC
GCCGCCGCCT TTGATCACGA GGGCAAAGCC GTACTGGTGA TCACGGCATT GGGGCATGAG
GACAATTTTC CAGCGAACTG GGACTCCGAT ATCGCCCGCG CCGTGCGCCA GGCGGCGGCG
GATGTGTCGC TGCGGCTGGG TTACCGGGTC AAGGCATCAA TCGGGCCCTA G
|
|---|
| Protein sequence | MDKDEHDHQK EHKEQRAVQS VEIGGRLLLA LAEHPGPMTL KDLAAKAGLP ASRAHTYLVS
FGRLRLIEQD AVTGRYALGA AALQVGLSCL HQLDPLKAAT PIAEALALAI DQTVAIAVWA
NFGPTIVRYI EASQPLHVSM RMGTVMSILG TATGRAFAAT LPRHQLEQAM QGAFGDGPRR
LDRSAVKDVA QEIQDIQAEL RQHGVVRAAG RPIPGVNAFS AAAFDHEGKA VLVITALGHE
DNFPANWDSD IARAVRQAAA DVSLRLGYRV KASIGP
|
|---|
| |