Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_4139 |
Symbol | |
ID | 4013194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 4345838 |
End bp | 4351912 |
Gene Length | 6075 bp |
Protein Length | 2024 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637943786 |
Product | UvrA family protein |
Protein accession | YP_550929 |
Protein GI | 91789977 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0178] Excinuclease ATPase subunit |
TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.79148 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTTGACC TCTTCAGGAA AGACCCAGCA ATGTCCCAGG GAACCATCCG CATCCGCGGC GCGCGCCAGC ACAACCTCAA AAATCTTGAC CTGGATATCC GCACCGGGGA GCTGACGGTG GTCACCGGCC CCAGTGGTTC GGGAAAGTCC TCGCTGGTGT TCGACACGCT GTTCGCCGAA GGCCAGCGCC GCTATGTCGA GACGTTCTCG GCCTACGCCC GGCAGTTTCT GGACCGCATG GACAAGCCCG CTGTCGACAA GGTGGAGGGC GTGCCGCCGG CCATTGCAAT CGACCAGAGC AACCCGGTGC GCAGTTCGCG CTCCACCGTG GGCACGATGA CGGAGCTCAA TGACCACCTG AAGCTCTTGT ATGCCCGCTC CGCCCAGCTG TTTGACAAAC AGACGGCACA GCTGGTGCGC CATGATTCGC CGGAATCGAT TTATGCGGGA CTGATGGCGC GCACGGCAGC CGTGGAGCAA GCCCAACTTT CGGCAGCGCC ACCCCAGCGA GAATTAGCCC CTCTTCATGA TGAAAGGGGC AGCGCAACGC CGGAGGCACG CGAAGCGACA AGCGTGGGGG TCCGTCTTGT GATGACCTTC CCGGTCGAGC TGCCCGGCAA CACCAGCGCT GAAGAGGTGA CGCAATGGCT GTCCGCCAGC GGCTTCACGC GGGTGCATGC CGAGCGGCAG ATCAGCACAC CGGCCGGCCC GCACAAGCTG CTCGACGTGG TGGCTGACCG CTTTCGCATC CAGACCACCG AAAAAGTCCG GGCGATTGAA GCCATCGAAA TGGCGCTGAA ACGCGGCGGC GGCCGGCTCA ATGTGTATGT GATGGGCGCA GGCCCCGCGT CGCCCTCTTC CGCCACGCCC GAAGAGATGT GGCGCTTCTC CACCGGCCTG CATTGCCCCG ACAGCGACAC GCGCTACACC GACCCGACAC CGTCGCTGTT TTCCTTCAAT TCGGCCATGG GCGCCTGCGA GACCTGCCGC GGCTTCGGCC GGGTCATCGG CGTCGACTAC GGGCTGGTGA TACCCAACGA CAAGCTCACG CTGCGCGCCG GCGCCATCAA GGTCATGCAG ACGCCGGCGT GGCAGGAAGC GCAGGACGAT TTGATGCGCC ATGCCGAAAC GGCCGGCATT CCACGCGACA CACCCTGGTA CAAGCTCACG CCCGAGCAGC AGGCCTGGGT GATCAACGGT TCGCCGAGCT GGAACGGCAA ATGGAACCAG CACTGGTTCG GCATCAAGCG CTTCTTTGCC TACCTGGAAA GCAAGGCCTA CAAAATGCAC ATCCGTGTGC TGCTGTCCAA GTACCGCAGC TACACCCAGT GCGAGACCTG CGGCGGCGCG CGCCTCAAGC TGGAGTCGCT GCTCTGGCGG CTTGGCTCCA AAGAGGCTGC CGATGCGGTG CTGCCGCCTG GCCAGCGCTT CATGCCGGTG GGCGTGCAGT GGAGCCGCCA GCAGCTCGAA GCCTTGCCGG GCCTGTGCCT GCATGACCTG ATGCGCCTGC CGATTGACCG CCTGCAGAAA TTCTTTGCCA GCCTGTCGCT GGCCGCCGAA GGGGACGATG CGGAACAGAA GGCCCTCAAA CTGCTGTTCG AGGAAATCCA GACCCGCGTG AAATACCTGT GCGATGTCGG CATTGGCTAC CTCACGCTGG ACCGGCAAAG CCGCACGCTG TCGGGTGGCG AGGTGCAGCG CATCAACCTC ACCACCGCGC TGGGCACCTC GCTGGTCAAC ACGCTGTTCG TGCTCGATGA GCCGTCCATC GGCCTGCATC CGCGCGACAT GAACCGCATC ACCCAGGCCA TGCACCGGTT GCGCGATGCC GGCAATACGC TGGTGGTGGT GGAGCATGAC CCCGCCGTGA TGCTGGCGGC CGACCGCATG ATAGACATGG GACCCGGCCC GGGCGAGAAG GGCGGGCAGA TCGTGTTTGA CGGCACGCCC GAGGACCTCC GGCACGCCGA CACGCTGACC GGCGCCTACC TGGGCTCGCG CAAGCGGGTG GGCCTGGGGC TCAAGCGCGC GGTGAGCGAC AACACTCCGC GCCTCATCCT CGAAGGCGCC CGCGACCACA ACCTGAAAAA TCTGACGGTG GAGTTCCCGC TGCAGCGCCT GGTGTGCGTC ACCGGTGTCA GCGGCTCCGG CAAGTCCACG TTGATGCAGG ACATCCTCGC GCCCGCCTTG CTGCGCCAGT TTGGCAAGGC CACGGAAACG CCGGGCCTGC ATGACCGGCT CATGGGGGCC GACCACCTGA CCGACGTGGT GTTTGTCGAC CAGTCGCCCA TCGGCAAGAC GGCGCGCTCC AACCCCGCGA GCTATGTAGG CGCTTGGGAT GCGGTGCGCG AACTGTTTGC CCAGTCACCG CTGGCCAGGC AGCGCAGCTA CACCGCCACC AAATTCAGTT TCAACAACGG CGACGGGCGC TGCCCGACCT GCGGCGGCTC GGGCTTCGAG CATGTGGAGA TGCAGTTTTT GAGTGACGTG TACCTGCGTT GCCCCGACTG CGACGGCAAG CGCTACCGGC CGGAAATCCT GGAGGTGACG ATTGAGCGCA AGGCCATCGG CCAGCTCAAG CCGGTGCTGA TGAATGTGTC CGATGTGCTG GAGCTGACGG TCAGCGAAGC CGTGCAGCTG TTCGCGCAGG ACCGCGAAGT GCTGCGCGCG CTGCAGCCCA TCGTGGATGT GGGCCTGGAG TACGTGAAGC TGGGCCAGCC CGTGCCCACG CTGTCGGGCG GCGAGGCGCA GCGCCTCAAG CTGGCTGGCT TTCTGGCCGA AGCCTCGAGG ACGGCAAGCA AGAGCAGTGC AAGCAAGCAG GCGCTGGCGC TCAAGCACCC GGGCCGCGGC ACGCTGTTCC TGTTTGACGA GCCGACCACC GGCCTGCACT TTGACGACAT TGCCAAACTC ATGCGCGCGC TGCGCAAGCT GATGGATGCG GGCCATTCGC TGATCGTCAT TGAACACAAC CTGGATGTGA TTCGCTCGGC CGACTGGCTG ATCGACCTCG GGCCCGAGGG CGGCGAGGGG GGCGGCCTGC TGGTGGCCCA AGGTACGCCC GAAGAGGTGC GCCAGCACCC GACCTCGCAC ACCGCCAAGG CGCTGCGCGA GTACGAGCTG GCCATGGGCC AGGTGCATGG CGTGGAAGAG GTCCGGCCCA AGGCCTGGAC CACGCGGCCG GCCTTCTCCA ACCTGATCCA GATCGTCAAC GCCAAGGAAA ACAACCTCAA GAGCCTGTCG GTCGACATTC CGCGCGGCAA GTTCAATGTG GTCACCGGCG TGTCAGGCTC GGGCAAGTCC ACGCTGGCCT TTGACATTTT GTTCAACGAA GGTCAGCGGC GTTATCTCGA GTCGCTCAAT GCCTATGCGC GCAGCATCGT GCAGCCGGCC GGGCGGCCTG AAGTTGATGC GGTGTACGGC ATTCCGCCCA CCGTGGCCAT CGAACAGCGC CTGTCGCGCG GCGGGCGCAA GTCCACCGTG GGCACCACCA CCGAGGTCTG GCATTTCCTG CGCCTGCTGT ATGTGAAGCT GGGGGTGCAG CATTGCACCA AGGACGGTGC GGCGGTGATG CCGCAGAGCC CGGAGAGCAT CGCGGCCCAG TTGCTCAAGA CCTACCGCGG CCAGCACATC GGCCTGCTGG CGCCGCTGGT GATTGCCCGC AAGGGCGTCT ACACCGAGTT GGCCGACTGG GCCCGGCCGC GCGGCTATAC GCATTTGCGC ATCGACGGCG AGTTTTTGCC GACCACCGGT TTTCCGCGCA TTGACCGCTT CAAGGAGCAC ACGGTCGAGC TGCCGGTGGC GGACATCCAC GTCACGCCCG AGAACGAAGC CGCGCTGCGG GTTGCGCTGG CCACTGCACT GGAGCATGGC AAGGGCGTGG TGCATGTGCT GGCCCCGCTG GACGGCCTGC GCGGCGCGAT GATGGCGGGC GCCTCCACCA AGGGCCTGGG CCGGCTGGAG GCCTTCTCCA CCAAGCGCGC CTGCCCGGTC TGCTCGACGT CTTACCCCGA ACTCGATCCG CGCCTCTTCA GCTACAACAG CAAGCACGGC TGGTGCCCCG ATTGCGTGGG GACGGGCGTC AAGCTCAGCA AGGAGCAGCG CAAGGTGTTT GACGACTCGG TGCGCGACGA CGACAACAAG GGCCGCGAGC AGACTTTTGG CGAGCCGGAG GTCGACGATG TGGTCGATGC CGCTTGCCCC ACCTGCGAAG GCACGCGCCT GAACAAACAG GCGCGCGCGG TGAAATTTGC CGGTGTGGGC ATTGCCGACA TCGCCGGCCT GTCGGTGACG GATGTTCGCC GCTGGGTTGA AAAACTGGCG CTGGCAGGCC GCGAGGCCGG CATTGCCCGC GACCTGGTGC CCGAAATCAA AAGCCGGCTG GAGTTTCTCG AGGACGTGGG CCTGGGCTAC CTCACGCTGG ACCGCGGCGC GCCCACGCTG TCGGGCGGCG AAGCCCAGCG CATCCGGCTG GCGGCGCAAC TGGGGTCCAA CCTGCAGGGC GTCTGCTACG TGCTCGACGA GCCCACCATC GGCCTGCATC CGCGCGACAA CCAGATCCTG CTCAGCGCGC TGGGCAAGCT CAGCGACCGC GGCAACACGC TGGTGGTGGT GGAGCACGAC GAAGACACGA TACGCCGTGC CGACAACATC ATCGACATCG GGCCCGGCGC GGGCAAGCGC GGCGGGCAAC TGGTGGCCCA GGGCACGGCG GCGCAATTGT CTGCGGTGCC GGAGTCGCTG ACCGGCCGCT ACCTCGCACA CCCGCTGATC CATCCGCTGC ATGCCCGCCG CGAAACGGAG AAGCCCCTCA CCCCAGCCCT CTCCCCAGAG GGGCGAGGGA GCGAAACGGG CTTGCTCCCT CTCCCTCTGG GAGAGGGCGG GGGTGAGGGC TCCCCTGCCA AGCCCCTGAG CAAACAAAAG CAGGCCGCGC TGAAAGCCGC AGCATTGAAG GCGGCCGCAG CAAGCGCCAG TGCGCTGCAC AACGCCGCAC CCGCTGCCGC GAGCAAATTC ACCTCCTGGC TCACCGTGGT CAATGCCGGC CTGCACAACC TCAAGAGCGT GTCGGTCGAT GTGCCGCTGT ACCGGCTGGT GGCGGTCACC GGCGTGTCGG GCTCCGGCAA GTCCACGCTG GCGCGCGACG TGCTGCTGAC CAATGTGCAT GCGGGCGTGA TGCTGCGCTC CACCAAGGCC GGGCGCGATG CTGACGACAA GGGCAAGACG CCTGACTGGG CGGGCTGCGA GCGCATCGAG GGCTACGCCG CGGTGGACCG CGTGCTGGAA GTTGATCAGA CACCCATCGG CAAGACGCCG CGCTCCTGCC CGGCCACCTA CATCGGTTTC TGGGACACGA TTCGCAAGCT GTTTGCCGAC ACGCTGGAAG CGCGGGCGCG CGGCTACGGG GCCGGGCGCT TCAGCTTCAA CACCGGCGAG GGGCGCTGCC CGACCTGCGA GGGCGCCGGT GTGCGCACCA TCGGCATGAG CTTTCTGCCC GACGTGAAGG TGCTGTGCGA GACCTGCCAC GGCGCGCGCT TCAACCCCGA GACGCAGGCC GTGACCTGGC GCGGCAAAAG CATAGGCGAC GTGCTGAAAA TGGAAGTGGA TGAGGCGGTG GCGTTTTTTG CCTCCATGCC CAGCATTGCC CACCCGTTGC AGCTGCTCAA GGATGTGGGC CTGGGCTACC TCACGCTGGG CCAGCCTTCG CCAACGCTGT CGGGCGGCGA GGCGCAGCGC ATCAAGCTGG TGACGGAGCT GAGCAAGGTG CGCGACGACA TCACGCGGCG CGGCCAGAAG GCGCCGCACA CGCTGTACGT GCTGGACGAG CCCACGGTGG GCCTGCACAT GGCCGACGTG GAAAAGCTGA TTCACGTGCT GCACCGCCTG GTCAACGGCG GCCACAGCGT AGTGGTCATC GAGCACGACC TGGACGTGGT GGCTGAGGCC GACTGGGTGA TTGACCTGGG TCCCGATGGC GGTGACGCCG GTGGGCAGGT CGTCGCCTCG GCGCCGCCGG AGGCTGTCGT GAAGCTGGGC ACGCACACCG GGAATGCGTT GCAAAGTGTG CTGGCGAGGG TGTAA
|
Protein sequence | MFDLFRKDPA MSQGTIRIRG ARQHNLKNLD LDIRTGELTV VTGPSGSGKS SLVFDTLFAE GQRRYVETFS AYARQFLDRM DKPAVDKVEG VPPAIAIDQS NPVRSSRSTV GTMTELNDHL KLLYARSAQL FDKQTAQLVR HDSPESIYAG LMARTAAVEQ AQLSAAPPQR ELAPLHDERG SATPEAREAT SVGVRLVMTF PVELPGNTSA EEVTQWLSAS GFTRVHAERQ ISTPAGPHKL LDVVADRFRI QTTEKVRAIE AIEMALKRGG GRLNVYVMGA GPASPSSATP EEMWRFSTGL HCPDSDTRYT DPTPSLFSFN SAMGACETCR GFGRVIGVDY GLVIPNDKLT LRAGAIKVMQ TPAWQEAQDD LMRHAETAGI PRDTPWYKLT PEQQAWVING SPSWNGKWNQ HWFGIKRFFA YLESKAYKMH IRVLLSKYRS YTQCETCGGA RLKLESLLWR LGSKEAADAV LPPGQRFMPV GVQWSRQQLE ALPGLCLHDL MRLPIDRLQK FFASLSLAAE GDDAEQKALK LLFEEIQTRV KYLCDVGIGY LTLDRQSRTL SGGEVQRINL TTALGTSLVN TLFVLDEPSI GLHPRDMNRI TQAMHRLRDA GNTLVVVEHD PAVMLAADRM IDMGPGPGEK GGQIVFDGTP EDLRHADTLT GAYLGSRKRV GLGLKRAVSD NTPRLILEGA RDHNLKNLTV EFPLQRLVCV TGVSGSGKST LMQDILAPAL LRQFGKATET PGLHDRLMGA DHLTDVVFVD QSPIGKTARS NPASYVGAWD AVRELFAQSP LARQRSYTAT KFSFNNGDGR CPTCGGSGFE HVEMQFLSDV YLRCPDCDGK RYRPEILEVT IERKAIGQLK PVLMNVSDVL ELTVSEAVQL FAQDREVLRA LQPIVDVGLE YVKLGQPVPT LSGGEAQRLK LAGFLAEASR TASKSSASKQ ALALKHPGRG TLFLFDEPTT GLHFDDIAKL MRALRKLMDA GHSLIVIEHN LDVIRSADWL IDLGPEGGEG GGLLVAQGTP EEVRQHPTSH TAKALREYEL AMGQVHGVEE VRPKAWTTRP AFSNLIQIVN AKENNLKSLS VDIPRGKFNV VTGVSGSGKS TLAFDILFNE GQRRYLESLN AYARSIVQPA GRPEVDAVYG IPPTVAIEQR LSRGGRKSTV GTTTEVWHFL RLLYVKLGVQ HCTKDGAAVM PQSPESIAAQ LLKTYRGQHI GLLAPLVIAR KGVYTELADW ARPRGYTHLR IDGEFLPTTG FPRIDRFKEH TVELPVADIH VTPENEAALR VALATALEHG KGVVHVLAPL DGLRGAMMAG ASTKGLGRLE AFSTKRACPV CSTSYPELDP RLFSYNSKHG WCPDCVGTGV KLSKEQRKVF DDSVRDDDNK GREQTFGEPE VDDVVDAACP TCEGTRLNKQ ARAVKFAGVG IADIAGLSVT DVRRWVEKLA LAGREAGIAR DLVPEIKSRL EFLEDVGLGY LTLDRGAPTL SGGEAQRIRL AAQLGSNLQG VCYVLDEPTI GLHPRDNQIL LSALGKLSDR GNTLVVVEHD EDTIRRADNI IDIGPGAGKR GGQLVAQGTA AQLSAVPESL TGRYLAHPLI HPLHARRETE KPLTPALSPE GRGSETGLLP LPLGEGGGEG SPAKPLSKQK QAALKAAALK AAAASASALH NAAPAAASKF TSWLTVVNAG LHNLKSVSVD VPLYRLVAVT GVSGSGKSTL ARDVLLTNVH AGVMLRSTKA GRDADDKGKT PDWAGCERIE GYAAVDRVLE VDQTPIGKTP RSCPATYIGF WDTIRKLFAD TLEARARGYG AGRFSFNTGE GRCPTCEGAG VRTIGMSFLP DVKVLCETCH GARFNPETQA VTWRGKSIGD VLKMEVDEAV AFFASMPSIA HPLQLLKDVG LGYLTLGQPS PTLSGGEAQR IKLVTELSKV RDDITRRGQK APHTLYVLDE PTVGLHMADV EKLIHVLHRL VNGGHSVVVI EHDLDVVAEA DWVIDLGPDG GDAGGQVVAS APPEAVVKLG THTGNALQSV LARV
|
| |