| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3544 |
|---|
| Symbol | |
|---|
| ID | 4013807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 3744755 |
|---|
| End bp | 3746002 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637943206 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_550350 |
|---|
| Protein GI | 91789398 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.773676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.279857 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGC CCCAAACCGC TGGCCCGCGC AAGGCCGCAC TCTGGCTGGT GCTGCTGGCA
GCCGGCGGCG CCTTTGCCCT GACGATGGGT GTGCGCCAGA CCATGGGCCT GTTCCTGTCG
GCGCTTAACA CTTCGACCGC GCTGGGCATC GGCAGCATCA GCTTGGCCTT TGCCTTCGGC
CAGCTCTGGT GGGGCCTGAC ACAGCCCTTT GCCGGCGCTG TGGCCGACCG CATCGGCACC
GGTCGCGTGA TTTTCATCGG CGTGCTGCTG GTCGCCGTGG GCACCATCAT CACGCCGCTC
ATGACCAGCA CGGCCGGCCT GATTTTTGCC ATCGGCGTAC TGGCCGCGGG CGGCGCCGGC
ATGGCCGGTC CGTCGGTCCT GATGGCCGCG AGCACGCGCC TGGTGCCGCC TGAAAAACGG
GGTCTGGCCA CCGGCATCGT CAACGCCGGC GGCTCCTTCG GCCAGTTCGC CATGGCGCCC
ATCGCCATTG GCCTGACGGC CGCCGTGGGC TGGGCCAGCG CGATGCAATG GCTTGGCGTG
CTGGTGTTGC TGGCGCTGCC GGCGGTGTGG GCGCTCAGGG GCAACGCGAA AGCCCTGGCC
GCGCAGGCCG CGGCGGCTTC GGGCACCAAG GCGCTCAGCG CCCGCCAGGC GATTGGCGAG
GCGCTTGCCA CGCCCAGCTA CCGCTACCTG AGCCTGGGCT TCCTGGTGTG CGGTTTTCAC
GTCGCCTTCC TGGCCACGCA CCTGCCGGGC GTGGTGGCGG CCTGCGGCCT GCCGCCCGAG
GTGGGCGGCT GGGCGCTCGC GATGATCGGC CTGTTCAACA TCGTCGGCAG CCTGGCGATG
GGTTGGGCTG TCGGCCGCTG GCGCATGAAG TCGCTGCTGG CCCTGCTGTA CACCACGCGT
GGTCTGGCCG TGCTGGCCTT CCTGCTGGCG CCCAAAACGC CGGCCGTCAT GCTGGTCTTT
GCGGCCGTCA TGGGCGTGAC TTTTCTCTCG ACGGTTCCGC CAACCGCAGG GCTGGTCGCC
AAGATGTTCG GCACCTCCAA CATGGCCATG CTGTTTGGCG TGGTGATGCT GGCGCACCAG
GTCGGCGGCT TTCTCGGCGC CTATCTCGGC GGTTATGTGT TTCAGGTGAC CGGCAGCTAC
GACTGGGTCT GGTACATCGA CATTGTGCTG GCCGCTGGCG CTGCGCTGGT GAACCTGCCG
ATCCGCGAAG CCGGTCTGCC GCGCCGCGCC ATGTCTGCGG CGGCCTGA
|
|---|
| Protein sequence | MNKPQTAGPR KAALWLVLLA AGGAFALTMG VRQTMGLFLS ALNTSTALGI GSISLAFAFG
QLWWGLTQPF AGAVADRIGT GRVIFIGVLL VAVGTIITPL MTSTAGLIFA IGVLAAGGAG
MAGPSVLMAA STRLVPPEKR GLATGIVNAG GSFGQFAMAP IAIGLTAAVG WASAMQWLGV
LVLLALPAVW ALRGNAKALA AQAAAASGTK ALSARQAIGE ALATPSYRYL SLGFLVCGFH
VAFLATHLPG VVAACGLPPE VGGWALAMIG LFNIVGSLAM GWAVGRWRMK SLLALLYTTR
GLAVLAFLLA PKTPAVMLVF AAVMGVTFLS TVPPTAGLVA KMFGTSNMAM LFGVVMLAHQ
VGGFLGAYLG GYVFQVTGSY DWVWYIDIVL AAGAALVNLP IREAGLPRRA MSAAA
|
|---|
| |