| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3047 |
|---|
| Symbol | |
|---|
| ID | 4014277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3213285 |
|---|
| End bp | 3215498 |
|---|
| Gene Length | 2214 bp |
|---|
| Protein Length | 737 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637942712 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_549859 |
|---|
| Protein GI | 91788907 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.773185 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCTG TGTCCGTTTC CAGCTGGGCA CAAAACGTCA CGCCAACTCC CAGCGCCACA
CCCGCTGCAT CGTCTACTCA GGCTGAAGGT AAAACCCTGG CTCCCGTGGT GATCAAGGAA
AAAGCTGAAG CCGAAGAAGG CAAGGACTCT GTGCGCGCCA CCCGCTCCAC CATCGGCAAA
GGCAACCAGG AACTACGCGA CATACCCCAG TCTGTCACGG TGGTCACGGA AAAACTGATT
GACGACCGCA ATCTGGATAC CGTGAAAGAG GCCCTGAAAA ATACCGCGGG CATCACTTTT
CTGGCGGCAG AAGGCGGCGA AGAAGATATT CGCTTGCGCG GCTTTGCGTT GCAAAGCACT
GGCGACGTTT TTGTCGATGG CATTCGTGAC CCGGCGTTCT ACGAACGTGA CACGTTCAAC
CTGGACCGCC TTGAGTTGCT GCGCGGCTCA GCATCCATGT TGTTTGGCCG CGGCTCCACC
GGCGGTGCGG TCAACCAGGT CAGCAAATTG CCACGCCTGA TCAATGAAAA CGAGATTTCC
ACCACCCTGG GCAGTCACAA CTACAAGCGC GTGACGGGCG ACTTCAACAT CAAGACCGGC
GAGGACGCCG CACTGCGCAT CAATGCCATG GCTACCAAAG CCGACAACAA CGGCGCGGGC
AGCAGCATCG ACAAAAAGGG CCTGGCGGTG TCTTACCGCC TGGGCATCGG CACTGCCGAC
GAGTTCCTTG CCAGCCTGTA CTACCTTGAC AACAACAACG GCATAAACTA CGGCCTGCCG
TGGATTCGCC CCAACGCCAG TTCACCAGCC CGCGACACGA CCATCCTGCC GGTGGATCCC
AAAAACTATT ACGGCGCAGC CAGTGACTAC AACGCCGGCA GCGCCACCAT GGCAACGCTC
GGCCACATAC ACCGCTTCAG CAGCGACAGC GAACTGAAAA CACAATTGCG CGTCGGAAAA
TTCGAGCGCG ACCAGCGCGC CAGCACCATC CGTCTTGGCG CAGCGGCACT GCAACCCGGC
GGCGTGGCTG CCACGCTGGC CAGCTTCGGC CCGAACACCG TATTGACGCG CGGCACCCAG
CTCAAGATCC AGAACCTGGA TACCGTGAAT CTGCAAAGCG ACTTCAGCAC CAAGTTTGCT
GCTTTGGGTG TGCAACACGA GTTGCTGACC GGTGTCGACT TTTCCCAGGA AAAAAAGAGC
GTGTATGCCG CCCGAACCGC TGCCCAGGGC GGTGTCAACC TGACCAAGCC CAACACGCTT
GCCGGCACGC CCGACGACGG CGCCTCGATC CTGGAATCCC GCCGCGTGCT GCGCACCTCC
AGCGACTTCT CTTCCGATGG CGTTGGCGTT TATGCGCAAG ACCTGATCCA GATTGCGCCG
CACTGGAAAC TGCTGGCCGG CCTGCGCTAT GACCACATGA AGGGCAACTA CAACACCTTC
AGCATACCGG CTGCAGCCGC AGGCCCTGTC ACGACCACGT CGTACAGCCA GAGCATCGGC
GAGTGGAGCA AGCGCGCTGG CGTGCTGTAC CAGCCCAACC CGCTGCACTC ATACCACGTC
TCCTACGGCA CATCGTTCAA CACGTCAGGC GATACCTATT CGTACAGCGC GGCCACGGTG
AACACACCGC CGGAATCCAG CCGCAACTTC GAAATTGGTG CCAAGCTGGA TACGGCAGAC
AAGCGCTTTA CCACCCGCCT GGCCGTGTTT CATTCGACCA AGCTGCACGA ACGCAACACT
GACCCGCTCT TGAATATTGC TGTTTTGTCA GGCAAGCGCC ACGCGGCGGG TGCGGAGATC
GACATCACCG GACGCCTCAC GCCGCAATGG GAAATCTACG GCTCCTACAT GTGGATGCCC
AGCGCCCGGA TCGATATCGG GGCAGAAGGC GCTGAAGGCC AGGGTTCGCG CCCATCGCTC
ACACCACGCC ACAGTGGCAC CGTGTGGACC ACTTACCAGG TCACGCCCAA AGTGCGTGTG
GGTGGTGGCC TGAACTTCCG CGGTAAACAA ACACCAAACC GCAACCCGGG CTGGGAAGTG
CCGAGCTTCG TGACGGCTGA TTTGATGGCC GAATACGCCT TGAGCGACCA GATCACGGTA
AAGGCCAATC TGTCCAACGT CAGCAACAAA CTGTACGCTG ACGCACTGTA TTCAGGTCAC
TACATTTCCG GTGCTGGCCG CATCTTCCAG GTGACTGGCA CCGTGAAGTT CTGA
|
|---|
| Protein sequence | MLAVSVSSWA QNVTPTPSAT PAASSTQAEG KTLAPVVIKE KAEAEEGKDS VRATRSTIGK
GNQELRDIPQ SVTVVTEKLI DDRNLDTVKE ALKNTAGITF LAAEGGEEDI RLRGFALQST
GDVFVDGIRD PAFYERDTFN LDRLELLRGS ASMLFGRGST GGAVNQVSKL PRLINENEIS
TTLGSHNYKR VTGDFNIKTG EDAALRINAM ATKADNNGAG SSIDKKGLAV SYRLGIGTAD
EFLASLYYLD NNNGINYGLP WIRPNASSPA RDTTILPVDP KNYYGAASDY NAGSATMATL
GHIHRFSSDS ELKTQLRVGK FERDQRASTI RLGAAALQPG GVAATLASFG PNTVLTRGTQ
LKIQNLDTVN LQSDFSTKFA ALGVQHELLT GVDFSQEKKS VYAARTAAQG GVNLTKPNTL
AGTPDDGASI LESRRVLRTS SDFSSDGVGV YAQDLIQIAP HWKLLAGLRY DHMKGNYNTF
SIPAAAAGPV TTTSYSQSIG EWSKRAGVLY QPNPLHSYHV SYGTSFNTSG DTYSYSAATV
NTPPESSRNF EIGAKLDTAD KRFTTRLAVF HSTKLHERNT DPLLNIAVLS GKRHAAGAEI
DITGRLTPQW EIYGSYMWMP SARIDIGAEG AEGQGSRPSL TPRHSGTVWT TYQVTPKVRV
GGGLNFRGKQ TPNRNPGWEV PSFVTADLMA EYALSDQITV KANLSNVSNK LYADALYSGH
YISGAGRIFQ VTGTVKF
|
|---|
| |