| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2914 |
|---|
| Symbol | |
|---|
| ID | 4014411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3076776 |
|---|
| End bp | 3077804 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637942577 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_549726 |
|---|
| Protein GI | 91788774 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC ACATCATTGT CGTCAGCGCG GCCTTGTGCC TGTCGCTGCC CGCATTGGCG
CAGCAGCAAA TTACCGTCGT CAACTTTGGC GGCGCCAACG CCAATGCGCA GAAAAAAGCC
TACTACGAGC CCTATGAAAA GGCAGGCACA AAAGTTGTTG CCGTCGAATA CAACGGTGAG
CAGGCCAAGA TCAAGGCCAT GGTCGAAACA AAGAAAGTCA CCTGGGACGT TGTCGAGGTC
GAAGCGCCCG ATGTCCAGCG CGGTTGCGAC GAGGGACTGT TTGAAAAAAT TGACTTCAGC
AAAATCGGCA CCAAGGCGGA CTTCCTTCCA GCCGCCGTCA CCGAATGCGG TGTGGGCGTT
TTCGTCTGGT CCACCGTGAT GGCCTGGAAC GCGGACAAGG TCAAAACCGC CCCCGCCAGC
TGGGCTGATT TCTGGGATGT CAAGAAGATT CCCGGCAAGC GCGGCATGCG CAAGGGAGCC
CGCTACAACC TGGAGTTCGC CCTGATGGCC GACGGTGTCA AACCCGCCGA CGTCTACAAG
GTCCTGGCTA CCAAGGACGG CGCCGACCGC GCATTTCGCA AGCTGACCGA GCTCAAGCCC
AACATCCAGT GGTGGGAAGC CGGCGCCCAG CCCGCCCAGT TTCTGGTGGC TGGCGACGTG
GCACTCAGCA CCGTGTACAA CGGCCGCATT GACGCCGCCA ACCGGGAAGG CCGCAACCTG
AAAATCTACT GGCCAGGCGG CATTTACGAC CTGGACTACT GGGTCATCCC CAAAGGCGCC
CCCAACAAGG ATGCGTCGAT GAAGTTCATC GCCTTCGCCA GCCAGCCCGC CACGCAGGCC
GTGTATGCCC AGAACATTGC CTATGGCCCG GTCAACACCA AGGCCCTGAG CAAGCTCGAC
AAAAAGGTAC TGGACGACTT GCCGACATCG CCGGCCAATG CGAAAGAGGC CATCCAGATG
AACGTCGGCT TCTGGGCCGA TCAGGGTGAG GCGCTTGAAA AACGCTTTGC CGCCTGGGCC
ACGCAATAA
|
|---|
| Protein sequence | MKKHIIVVSA ALCLSLPALA QQQITVVNFG GANANAQKKA YYEPYEKAGT KVVAVEYNGE
QAKIKAMVET KKVTWDVVEV EAPDVQRGCD EGLFEKIDFS KIGTKADFLP AAVTECGVGV
FVWSTVMAWN ADKVKTAPAS WADFWDVKKI PGKRGMRKGA RYNLEFALMA DGVKPADVYK
VLATKDGADR AFRKLTELKP NIQWWEAGAQ PAQFLVAGDV ALSTVYNGRI DAANREGRNL
KIYWPGGIYD LDYWVIPKGA PNKDASMKFI AFASQPATQA VYAQNIAYGP VNTKALSKLD
KKVLDDLPTS PANAKEAIQM NVGFWADQGE ALEKRFAAWA TQ
|
|---|
| |