| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1454 |
|---|
| Symbol | |
|---|
| ID | 4012335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 1504728 |
|---|
| End bp | 1505477 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637941133 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_548300 |
|---|
| Protein GI | 91787348 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.77933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.490701 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCTTA AAGACAGAGT CGCCGTGGTC ACCGGCGGCG CAGGCCCCAA CGGCCTGGGT
TTCGCCACCG CCCGCATGAT GGCTGCGCAG GGCGCGACCA TCATCATTCT TGACCTTTCG
CAGGCCGACC CGGCCGCCGC GGCGGCCCGG CTGGGGCCAC AGCACATGGG CCTGGTGGCC
GATGTGACGA ACAAGGCCTC GTGCGACACG GCGGTGGCCG CGGTTCTGGA CGCCAAGGGC
CGGATCGACA TTCTGGTCAA CAACGCCGGC ATAACGCAGC CGCGCAAGAC CCTGGACATC
TCGCCCGAGG ACTATGACGC GGTGCTGGAC GTCAGCCTGC GCGGCACGCT GGTCGCCTCG
CAGGCGGTGC TGCCCACCAT GCTGGCGCAA AAGCAGGGCT CCATCGTGTG CATCTCCTCG
GTGTCGGCAC AGCGCGGCGG CGGCATCCTC GGCGGGCCGC ACTATTCGGC CGCGAAGGCG
GGCGTGCTGG GCCTGGCACG CGCCATGGCA CGCGAGTACG GCGGCCAGGG CATCAGGGTG
AACTGCGTCA CTCCCGGCCT GATTGCCACC GATATCAACA AGGGCAAGAT CCCCGACGAC
AAGCGCCAGG CCATTCTGGA CGGCATTCCG CTGGGCTACA TCGGTGCGCC GGATGACGTG
GCCGGCTGCG TCGTGTTTCT CGCCAGCGAT CTGTCCGGCT ATTGCACCGG CATCACGCTG
GACGTCAACG GCGGCATGCT GATTCATTGA
|
|---|
| Protein sequence | MLLKDRVAVV TGGAGPNGLG FATARMMAAQ GATIIILDLS QADPAAAAAR LGPQHMGLVA
DVTNKASCDT AVAAVLDAKG RIDILVNNAG ITQPRKTLDI SPEDYDAVLD VSLRGTLVAS
QAVLPTMLAQ KQGSIVCISS VSAQRGGGIL GGPHYSAAKA GVLGLARAMA REYGGQGIRV
NCVTPGLIAT DINKGKIPDD KRQAILDGIP LGYIGAPDDV AGCVVFLASD LSGYCTGITL
DVNGGMLIH
|
|---|
| |