| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1130 |
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| Symbol | |
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| ID | 4011829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 1168379 |
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| End bp | 1169449 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637940808 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_547980 |
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| Protein GI | 91787028 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0353247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.37183 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATTG GCCCCTACGC TTTGGCAAAC AGACTGTTTG TTGCGCCCAT GGCTGGTGTG
ACGGACCGGC CGTTTCGCCA GCTGTGCAAA AAGCTGGGGG CGGGCTATGC GGTCAGCGAG
ATGGTGACCT CGCGCCGCGA TTTGTGGGAC AGCCTGAAGA CTTCGCGCCG TGCCAACCAT
GCCGGCGAGG CTGCGCCGAT TGCGGTGCAG ATTGCCGGCA CCGACGCGCA GATGATGGCC
GAAGCTGCGG CCTACAACGT GGACCGCGGC GCTCAAATCA TCGACATCAA CATGGGTTGC
CCGGCCAAGA AGGTGTGCAA CAAATGGGCC GGCTCGGCCC TGATGCAGGA CGAAACGCTG
GCGCTGCAGA TTGTGGAGGC CGTCGTCGCC GCCTGCGCCC CCCATGGCGT TCCTGTCACG
CTCAAGATGC GCACCGGCTG GTGCCAGGCC CACAAAAACG CCCTGGCGAT TGCGCGCGCG
GCTGAAAGCG CCGGCGTGCA GATGGTTACC GTGCATGGCC GCACGCGCGA GCAGGGATAC
AAGGGCTTGG CCGAATATGA CACCATTGCC GCGGTGAAGT CGGCCTTGCG CATTCCGGTG
GTGGCCAATG GCGATATCAG CAGTCCGGAA AAAGCCCGCG ATGTGCTGGC TTACACCGGT
GCCGATGCCG TGATGATTGG TCGTGCGGCC CAGGGACGGC CCTGGATTTT CCGCGAGGTG
GCGCATTTCC TGGCCACGGG CACGCATCTT GCGCCGCCGC TGGTCGCGGA AGTCAGACGC
CTGTTGCTCG ATCATTTGCT GGATCACTAT GATCTGTATG GCCAATACAC CGGTGTGCGC
ACCGCACGCA AGCACATCGG CTGGTATGTC AAGACCTTGC CGGGTGGTGA GGTGTTTCGC
GCAAAGATGA ATCTGCTGGA AGACTGCGAG GCACAGCTGC GCGCAGTCGG GGATTTTTTC
GAGGCGCTTG GCGACCGGAT GGACCGCATT CCGGCAACTG GGGACGCCGG GAGCGGGCCG
AGGCAGGCAT GGATGAACAA AGATAAAAAT CAGGAGGAAG CTGCTGCATG A
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| Protein sequence | MNIGPYALAN RLFVAPMAGV TDRPFRQLCK KLGAGYAVSE MVTSRRDLWD SLKTSRRANH
AGEAAPIAVQ IAGTDAQMMA EAAAYNVDRG AQIIDINMGC PAKKVCNKWA GSALMQDETL
ALQIVEAVVA ACAPHGVPVT LKMRTGWCQA HKNALAIARA AESAGVQMVT VHGRTREQGY
KGLAEYDTIA AVKSALRIPV VANGDISSPE KARDVLAYTG ADAVMIGRAA QGRPWIFREV
AHFLATGTHL APPLVAEVRR LLLDHLLDHY DLYGQYTGVR TARKHIGWYV KTLPGGEVFR
AKMNLLEDCE AQLRAVGDFF EALGDRMDRI PATGDAGSGP RQAWMNKDKN QEEAAA
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