| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1050 |
|---|
| Symbol | |
|---|
| ID | 4012269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 1077273 |
|---|
| End bp | 1078133 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637940728 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_547901 |
|---|
| Protein GI | 91786949 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.875025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0927945 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCCA TCACGACACG ATATTTCCTG CAAACTGCCG GCACCCTGCT GGCCAGCCTG
GTGCTGGTGG CCTGCGGCAA GCAGGAGCCA CCGGCACCAG CGGCCACCGC GCCAGCACCC
GCCGCCTCGG CGCCCGCGCC GGCAGCCCGG GTGTATGTGG TCGGCACCGA CGCCGCCTAT
GCCCCTTTTG AATCGCAAAA CGAAAAAGGC GAGATCGTTG GTTTTGATAT CGACGTGGTC
AAGGCCGTGG CACAAAAAGC CGGCATCGAG GTGAAATTCA TCAATACGCC CTGGGAGGGC
ATCTTCAATT CACTGAACCA GGGCGACCGC GACCTGCTGG TTTCCGCGAT CACGATCACC
CCCGAGCGCA AGCAGACCAT GGATTTTTCT TCGCCCTACT TTGACGCACA ACAACTGATT
GCTGTGAAGA AAGACTCCAA AATCGCCGAC TTCAGCCACC TGAAAAAACT CAAGGTGGCC
GTGCAGAACG GCACCACCGG CGACGAGGTG GTCACCAAGC TGCAGGGCAA GGCCAGCCCC
AACATCAAAC GTTTCGAGTC CACCCTACTG GCCCTGAAAG AGCTGGAAGC CGGTGGCGTG
GATGCCGTAG TGGCTGACAA CGGCGTGGTG GTGCACTATG TCAACAACAA CGTCGGCGCC
AAGTTCAAGA CCATCAGCGA CGCCAGCTTT GCGGCCGAGC AATATGGCCT GGCGGTGAAA
AAGGGCAACA CCGAATTGCT GGAAAAACTC AACAAGGGCC TGGCCGACAT CAAGACCGAC
GGCACCTACA ACAAGATTTA CGCCCAGTAT TTTGGCGGGG CACCGGCGGC ACCTGCACCT
GCACCCGCGG CATCGAAATA A
|
|---|
| Protein sequence | MPSITTRYFL QTAGTLLASL VLVACGKQEP PAPAATAPAP AASAPAPAAR VYVVGTDAAY
APFESQNEKG EIVGFDIDVV KAVAQKAGIE VKFINTPWEG IFNSLNQGDR DLLVSAITIT
PERKQTMDFS SPYFDAQQLI AVKKDSKIAD FSHLKKLKVA VQNGTTGDEV VTKLQGKASP
NIKRFESTLL ALKELEAGGV DAVVADNGVV VHYVNNNVGA KFKTISDASF AAEQYGLAVK
KGNTELLEKL NKGLADIKTD GTYNKIYAQY FGGAPAAPAP APAASK
|
|---|
| |