| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0977 |
|---|
| Symbol | |
|---|
| ID | 4011733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 994472 |
|---|
| End bp | 995983 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637940656 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_547829 |
|---|
| Protein GI | 91786877 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00132044 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGT CAATCATTGC AAAACGAGAT GGGGCGGTCG TTGGAAGTGC CGGAAGCGCG
GAACGGACAC CTTCGGTCCG GTGGGCACTC GCCGCCCTTT CGCTGTCCAT GTTGCTGTCC
TCGCTCGGCA CCAGCATCGC CAATGTGGGC TTGCCGACCT TGGCACAGGC GTTCAACGCC
TCCTTCCAGG AAGTCCAGTG GGTCGTCCTC GCGTATCTCC TCGCCATCAC CACCCTGATC
GTCAGCGTCG GACGGCTCGG TGACATCACC GGCCGGAAGC GGCTGCTGCT GGCCGGCATC
CTCCTGTTCA CGGTGGCATC AAGCCTGTGC GGCATCGCGC CCACGCTCTG GCTGCTGATT
GCCGCCCGGG CGGCACAGGG CCTCGGAGCA GCCGTCATGA TGGCCCTCAC CATGGCATTT
GTCGGTGAGA CGGTTGCCAA GGCAAAGACC GGTAGCGCCA TGGGCCTGCT CGGAACGATG
TCCGCGATGG GCACCGCTCT CGGTCCATCG CTTGGTGGCG TTCTGATCGC CGGACTCGGT
TGGCCGGCCA TCTTCTTCGT CAATGTACCG CTGGGTATCC TGACTTTTCT TCTCGCACAT
CGCTACCTGC CCGTTGATCG CCGGGGGCCG AAGACTGATA GCGCCGGTTT CGACCATGCG
GGCACGCTGC TGCTGGCTCT GACGCTCGCG GCTTATGCAC TCGCCATGAC CATTCGTCAT
CATGACGGGC GCGGCAGTTT CGGTCCGCTG AACATGGCGC TGCTGTTGGC TGCTGCCCTG
GGCGTCGGCC TCTTCGTGCG CGCCCAGGCA AGAGCCGCAT CCCCTTTGAT CCGGTTGGCG
ATGTTCCGCG ACCCAGGCTT AAGTGCAAGC CTCGCCATGA GCGCACTCGT CTCGACGGTG
ATGATGGCAA CGCTGGTGGT CGGGCCGTTC TATCTCTCCC GTGCGCTCGG GCTCAACGCG
GCACTTGTCG GACTCGTCTT GTCGGTCGGC CCGCTTGCCG CCGCGCTGGC CGGTGTGCCG
GCCGGCCGCA TGGCGGACCG TTTTGGCGCA CAACGCATGA CCATCGTTGG GCTCATCGCC
ATAGCGGCCG GCTCCTTCGT GCTATCCATG GTGCCGGCGA CGCCCGGCAT CCCCGGCTAC
ATCGCGCCCA TCGTCGTCAT CACCGTCGGC TATGCGCTGT TCATGACGGC CAACAACACC
GCCGTCATGA CCGATATCCG TCCGGACCAG CGGGGCGTCA TTTCCGGCAT GCTCAGCCTG
TCGCGCAATC TCGGGCTCAT CACCGGCGCA TCCGTGATGG GCGCGGTGTT CGCGCTCGCA
TCGGCAACGA CCGACATCAC AACGGCGCGT CCCGAGGCCG TTGCCACCGG CATGCGATTC
ACGTTCGCAG TCGCGGCGAT TCTGATCGTC GTCGCGCTCG CCATCGCGGT GGGAACTTAC
CGCCGCACAT GGCGCAATCG GGCACCTGCT CCAGGAGCAG CGTTGCAGGC GAGCAAGAAA
AATTCGGGAT GA
|
|---|
| Protein sequence | MLKSIIAKRD GAVVGSAGSA ERTPSVRWAL AALSLSMLLS SLGTSIANVG LPTLAQAFNA
SFQEVQWVVL AYLLAITTLI VSVGRLGDIT GRKRLLLAGI LLFTVASSLC GIAPTLWLLI
AARAAQGLGA AVMMALTMAF VGETVAKAKT GSAMGLLGTM SAMGTALGPS LGGVLIAGLG
WPAIFFVNVP LGILTFLLAH RYLPVDRRGP KTDSAGFDHA GTLLLALTLA AYALAMTIRH
HDGRGSFGPL NMALLLAAAL GVGLFVRAQA RAASPLIRLA MFRDPGLSAS LAMSALVSTV
MMATLVVGPF YLSRALGLNA ALVGLVLSVG PLAAALAGVP AGRMADRFGA QRMTIVGLIA
IAAGSFVLSM VPATPGIPGY IAPIVVITVG YALFMTANNT AVMTDIRPDQ RGVISGMLSL
SRNLGLITGA SVMGAVFALA SATTDITTAR PEAVATGMRF TFAVAAILIV VALAIAVGTY
RRTWRNRAPA PGAALQASKK NSG
|
|---|
| |