| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0533 |
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| Symbol | |
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| ID | 4011402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 532375 |
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| End bp | 533799 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637940217 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_547393 |
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| Protein GI | 91786441 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0137425 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGACTC ACGAGAACAT ATCCACGTCC GATTCCTTGT CGAGCAAGAC CGAAATCAGC
GAGTTGCTGC ATTTGCGACA GCTTTGCAAA GACTTCGAGG AAATTTATCG CAACTCGTTT
GACGGCATTT TTGTGGCCGA TGGCAAGGGC ATCACGCTGA TGGTCAACGA GGGCTGTGAG
CGCAACTACG ACCTCAAGGC TGAGGAATTG GTAGGTCACC ACGTTTCAGA ATTTGAAAAA
AAGGGGTGGA TACGTCCGGT GATTGCAACC CGTGTGGCGG CCGAGCGAAA ACGCATTTCT
GCCATGCAGC ACACCCACAC TGGGAAAACC ATCATGGTCA CGGGCATTCC CTTGTTCGAC
GACCAGGGCG CGGTGCGCAA AGTCATCATC AACTCGCGCG ACACCACCGA GCTGGTGCAG
TTGCAGGAGG CATTGCTGCG CACGCGCGAG GATTTGCAGC GTGTTGAAAA CGAGATGAAA
GAGCTACGTC TGCAAAACCT CAAACCCGAT GGTGTGGCGC TCAAAAGCCA GAGCATGCAG
CGCTTGTCCA GCTTGGCATT GCGAGTAGCC AAAGTGGATA CGGCGGTGCT GATCAGCGGC
GAATCGGGGG TGGGCAAGGA GGTGCTGGCG CGACAGATTC ACAAGGAAAG TCAGCGTAGC
CAGGGACCTT TGATCAAAAT CAATTGCGGC GCCATTCCAC GCGAGTTGCT GGAGTCGGAA
TTGTTTGGCT ACGAGGGAGG GGCGTTCACT GGCGCACTCA AGCAGGGCAA GGTAGGCCTG
ATAGAAACCG CCCACCACGG CACCCTGTTT CTGGATGAGA TCGGCGAACT GCCGATGAAC
CTGCAGGTCA AGCTGCTCCA GACGCTGCAA GACCATACTG TGGTGCGTGT GGGCGGCACT
CGGGTCGTCC ACGTCGATCT GCGGGTGATT GCGGCAACCA ATCGCGACTT GCAAGTCATG
GTGGACAACA ACCAGTTTCG CAGCGACCTG TACTACCGCC TGAACGTGGT TCCATTGAGC
GTGCCGCCCC TGCGCTTGCG CAAGGAAGAC ATTTTTCCGC TGACAGAGCA TGCGCTCGAC
GAGTTAAATG CCTCATACAG TTTCAACAAG CGATTTTCCG AACGCGCCTT GAAGTCTTTG
CTGACGTACG AGTGGCCTGG CAATGTGCGC GAGCTGCGCA ATATCGTCGA GCGCCTGGTG
GTGACCACGC CTACGGACCT GATTGACGTG ATCGACTTGC CGGAATATCT AATAGCACCA
GTGGACCAGG CCTTCGCAGA CCCGCTTGAG TACCGCGCCA AAGTGGCTCA ATTTGAAAAG
CAACTTGTCG CAGAGGCGCT CAAGAAATAT GGCAATACAC GCGCCGTGGC CAAGCAGTTA
AATCTCAGCC AATCCACTGT GGTTCGCAAG CTGAACGCAG CATGA
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| Protein sequence | MQTHENISTS DSLSSKTEIS ELLHLRQLCK DFEEIYRNSF DGIFVADGKG ITLMVNEGCE
RNYDLKAEEL VGHHVSEFEK KGWIRPVIAT RVAAERKRIS AMQHTHTGKT IMVTGIPLFD
DQGAVRKVII NSRDTTELVQ LQEALLRTRE DLQRVENEMK ELRLQNLKPD GVALKSQSMQ
RLSSLALRVA KVDTAVLISG ESGVGKEVLA RQIHKESQRS QGPLIKINCG AIPRELLESE
LFGYEGGAFT GALKQGKVGL IETAHHGTLF LDEIGELPMN LQVKLLQTLQ DHTVVRVGGT
RVVHVDLRVI AATNRDLQVM VDNNQFRSDL YYRLNVVPLS VPPLRLRKED IFPLTEHALD
ELNASYSFNK RFSERALKSL LTYEWPGNVR ELRNIVERLV VTTPTDLIDV IDLPEYLIAP
VDQAFADPLE YRAKVAQFEK QLVAEALKKY GNTRAVAKQL NLSQSTVVRK LNAA
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