| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0308 |
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| Symbol | |
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| ID | 4011640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 331329 |
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| End bp | 333242 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637939993 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_547171 |
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| Protein GI | 91786219 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTTA TCAAACAGCT CTGGATCGCC ATCATCGTGG TCATGACCAT TGCCTTCGGC
GGCAGCATGG TCGTCAGTGT GTTGTCTGCA CGCCACTACC TGGAGCAGCA GCTGCAAGTG
AAGAACATCG ACAACGCCAC GGCGCTGGCC CTGTCGCTGT CGCAGTTGCC CAAGGACCCA
GTCACGGTCG AGCTGCAGGT GGCGACGCAG TTTGACGCCG GGCACTACCG CTTCATCCGC
ATCGTTTCGC CCACCGGCCA GACGGTGGTG GAGCGCGTCT TCACCGGTCA GCTGCAAGGC
GCACCGGCCT GGTTCGCCCG GCTCATCCCG ATCCGCGCAG TGCCCGGCCA GGCGCTGATC
CAGGATGGCT GGAAACAGTA CGGAACGCTG ACCCTGGCCA GCCACGAGCA GTATGTGTAC
AAGAGCCTGT GGGACGGCAC GCTGGAGCTG CTGCTGTGGT TTGTGCTCGG CAGCGTGATC
ACCGGCATCG CCGGCACGCT GGCCATACGC TTCATCACCC GGCCGCTGGG CGATGTGGTG
GGCCAGGCCG AGGCCATTGC CGAGCGCCGC TTCCTGCGCA TCGCAGAACC CCGCACGCCC
GAACTGCGCA GCGTGGTGCG CGCCATGAAC AGCATGGTGG AGCGCCTCAA AGCCCTGTTC
AGCGAGGAGG CCGCCCGCCT CGAAGCACTG CGCCAGAAGG TCAACCTCGA CGCGCTAACC
GGGCTGTCCG GGCGCGAGCA TTTCCTGTCG CAGCTGCGCG AGTTGCTGGT GGGCGAGGAC
TCTGGCGCCG AGGGCGTGCT GGTCATGCTG CGCGTAAACG ACCTGAACAT GCTGAATGCC
CGTCTTGGCC ACCAGCGTGC AGATACGCTG CTGCAGCAAC TCGGTGGCGT GCTCAAGGAC
AGCATGCGGG AGCACAGCGG CCAGCAGGCG GGGAGGCTCA AGGGCGGTGA TTTTGCCCTG
GCCTGCCCGG GCATCACCTC CCCGGCACAA GCGGCCAGCG AGCTGCACCA GCGCCTGAAC
CAGGCCTGGC TGCCCAACTG GGTGGCCGAA GTGCCTGACC TGTTCCATCT GGCGGCCGTA
CCCTATCAGC GCGCAGAAAG CATAGGCGAT CTGCTGAGCC GCGCCGACGA GGCCCTGGCC
CGTGCCGAGG CCGAGGGGCC GAACAGCTGG CATGCCAGCG AAGCGGACAG CGGCAGCACC
GCACGCCCCG CCGAGCAGTG GCGCAGCCTG CTCACCGAAG CCGTCGCCAG CGGCAAGCTA
AGGCTCGCCT TCTACCGCGT GGTCGGCAGC GGCAGCCAGA ACGCCATTCA CCAGGAAGGC
GTGATCCGCC TGCAAATCGA CGACACAGGC ACCCTGCTGC CCGCCCGTGA CTTCATGCCG
ATGGCCGCGC ACCTCAACCT CAGCGCGCCG ATAGACCTCG AGGTGGTCAG GCTCGCCATA
GCCCATCTGC GCACCACGCC CGGCGACATC GCGGTCAACC TGTCGGCCGA AACCATCGCC
GACTTCAGCT TCCGCTATGA GCTCAGGATG CTGCTGGAAT TCCACCCCGA GATCTGCAAG
CGTCTGCTGT TCGAGGTACC CGAGCAAGGC GTCTTCAAAC AGTTCAATGC CTTCCGCGAC
CTGGTGCTCA CCCTCAAGCC ACTGGGCTGT CGCGTCGGCA TCGAATACTT CGGCCAGCGC
TTTGCCGAGG GTGACAAACT CGCCGACCTG GGCCTGGACT ACATCAAGGT CCACCCCAGC
TATGTGCGCG ACATTGCCCA CAACCCGGGT AACCAGGAAT TCCTCAAGGG CCTGTGCAAG
GTGGCACGCA ATTTCGGCAT CGTGGTGATA GCGCTCGGCG TCGAGTCCGA CAGCGACCTG
CCGCTGCTGG CCTCGCTCGG ATTTGACGGG GTGACAGGGC CGGGTGTAAA GTGA
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| Protein sequence | MSLIKQLWIA IIVVMTIAFG GSMVVSVLSA RHYLEQQLQV KNIDNATALA LSLSQLPKDP
VTVELQVATQ FDAGHYRFIR IVSPTGQTVV ERVFTGQLQG APAWFARLIP IRAVPGQALI
QDGWKQYGTL TLASHEQYVY KSLWDGTLEL LLWFVLGSVI TGIAGTLAIR FITRPLGDVV
GQAEAIAERR FLRIAEPRTP ELRSVVRAMN SMVERLKALF SEEAARLEAL RQKVNLDALT
GLSGREHFLS QLRELLVGED SGAEGVLVML RVNDLNMLNA RLGHQRADTL LQQLGGVLKD
SMREHSGQQA GRLKGGDFAL ACPGITSPAQ AASELHQRLN QAWLPNWVAE VPDLFHLAAV
PYQRAESIGD LLSRADEALA RAEAEGPNSW HASEADSGST ARPAEQWRSL LTEAVASGKL
RLAFYRVVGS GSQNAIHQEG VIRLQIDDTG TLLPARDFMP MAAHLNLSAP IDLEVVRLAI
AHLRTTPGDI AVNLSAETIA DFSFRYELRM LLEFHPEICK RLLFEVPEQG VFKQFNAFRD
LVLTLKPLGC RVGIEYFGQR FAEGDKLADL GLDYIKVHPS YVRDIAHNPG NQEFLKGLCK
VARNFGIVVI ALGVESDSDL PLLASLGFDG VTGPGVK
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