| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0101 |
|---|
| Symbol | |
|---|
| ID | 4012301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 104975 |
|---|
| End bp | 105679 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637939786 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_546965 |
|---|
| Protein GI | 91786013 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.451177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.857442 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG AGAATTCTGT TGTCCTCGTC ACCGGTGCCA ATCGCGGCAT CGGCCAGGCG
TTCTCTCGCG AGTTGCTCGC CCGCGGTGCC CGCAAGGTCT ACGCTGGCGC GCGCGATCCT
GCGACCGTCA CCCAATCCGG TGTTCAGGCC CTGCGACTCG ACGTCACCAA GCCGGCAGAC
GTGGCCGCCG CCGCAGCGCT GGCGTCGGAT GTCACGCTGA TCATCAACAA CGCCGGCATT
GCCCAGCCTG GAGGCTTTCT CGCAGCGGAC AGCGAAGACG TCGCACGGCG CATCTTCGAG
ACCAACTTTT TCGCCATGTT GCGCATGAGC AAGGCCTTTG CGCCCATTCT CAAGGCCAAC
GGCGGTGGCG CGTTGCTCAA TGTGTTGTCG GTCGCTTCAT GGGTGAACGG CGGCGAGCTG
GCCGCCTATT CGGCCAGCAA GTCCGCAGCT TGGTCTCTCA CCAATGCCCT GCGCAACGAA
CTGGCGACGC AGAAGACGCA GGTGCTGGCA CTGCACATGG CCTACGTCGA TACCGATCTC
ACGCACGGGT TCGATGTCCC GAAGTCCAGC CCTGAGGAGA TCGTCAAGCG CGCGCTCGAC
GGACTCGAAT CGGGCCTTGA TGAAGTGCTG GCCGATGAGC TCACCCTGCA AGTCAAGCGC
GGGATGACGG TGGCCAGGCC CAGCTACCTA CCGCAGGCCT CCTGA
|
|---|
| Protein sequence | MKIENSVVLV TGANRGIGQA FSRELLARGA RKVYAGARDP ATVTQSGVQA LRLDVTKPAD
VAAAAALASD VTLIINNAGI AQPGGFLAAD SEDVARRIFE TNFFAMLRMS KAFAPILKAN
GGGALLNVLS VASWVNGGEL AAYSASKSAA WSLTNALRNE LATQKTQVLA LHMAYVDTDL
THGFDVPKSS PEEIVKRALD GLESGLDEVL ADELTLQVKR GMTVARPSYL PQAS
|
|---|
| |