| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7409 |
|---|
| Symbol | |
|---|
| ID | 6280703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010679 |
|---|
| Strand | - |
|---|
| Start bp | 120147 |
|---|
| End bp | 120827 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642619588 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001893623 |
|---|
| Protein GI | 187922034 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGCGTC TACGCCACGG GGCACACTTC TTTTCATCAC CCTTTCATGG AACGACAGAA
AACAGAATCG GCGGAACAGA CCAAAGGCGT GCTGCTGCGG CTTCCGATAG CGATCTACAC
GGCCTTGGCA CGAGAAGCGG GCCGAGAAAG CACCAGGCGA GGGGTGACGG TCTCTGTGCC
GAAACTACTT TTGGAAATAA TCGCGGACTG GCTAAAGGGC CGTCCGCAAG ACTGAGCGCT
GCGCGCCGAG CTGCGGCGCT TTTTCTATTT GCGTGCGTTG CAACGGCGCG CGCGGACTGC
CTCGATGACG CGGCGCGATA CTGGAATATC CCGCCGGACC TCGCACGATC CATCGCCATG
CAGGAAAGCA GTATGCGGCC GGGGGTCGTC ACGAAGAACC AGAATGGTTC GCGTGACATT
GGCCTAATGC AAATCAACTC TTCCTGGCTT CCAACCCTTC GACGCTATGG CATTCACGAA
GCCGACCTTC TGGACGGCTG TAAGAACGCC TACGTAGGCA ACTGGATTCT CGCCAGCAAT
ATTCAGCGTC TAGGATTCAA TTGGGACGCT ATCGGCGCGT ACAACGCAAA GTCGCCCGAC
AAGCGCGATG TGTACGCCCG AAAAATCTAT CGTCAACTTC TTGCCGTACA GGCCGGCAAG
GCATCATTGT TGAATCGCTA A
|
|---|
| Protein sequence | MGRLRHGAHF FSSPFHGTTE NRIGGTDQRR AAAASDSDLH GLGTRSGPRK HQARGDGLCA
ETTFGNNRGL AKGPSARLSA ARRAAALFLF ACVATARADC LDDAARYWNI PPDLARSIAM
QESSMRPGVV TKNQNGSRDI GLMQINSSWL PTLRRYGIHE ADLLDGCKNA YVGNWILASN
IQRLGFNWDA IGAYNAKSPD KRDVYARKIY RQLLAVQAGK ASLLNR
|
|---|
| |