| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7167 |
|---|
| Symbol | |
|---|
| ID | 6279117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3558774 |
|---|
| End bp | 3559547 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642618188 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001890824 |
|---|
| Protein GI | 187921792 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACACAT TTAGTTCGAC ACTCGCGGGA CAGCACGCGG TCGTCACCGG CGGGGGCAGC
GGCATCGGCG CCGCCGTCGC GGAAGCTCTG CTACGCGCCG GCGCGCGCGT CACGTTAATG
GGCCGCAACG CGGAACGGCT CGACGTGCAA CGCGCGAAAT GCCGGGCACT GGGCGACGTG
GCTTGCATCA GCGTCGACGT CACGCAGGAA GACTCCGTCG CGAGTGCATT CGCCGAGGCC
GGCGCAATCG ACATCCTCGT CAACAATGCG GGCCAGGCGC AAGCCGCGCC GTTCACGCAT
ACCGACATGG CGCTCTGGCA GCGCATGCTG GACGTGAACC TCACCGGCGT CTTTCTCGGC
ACGCGCGCGG CGTTGCCCGG CATGCTCGAA CGCGGCCATG GACGCATCGT CAATGTGGCC
AGCACGGCGG GGCAAATCGG CTACGCGTAC GTCGCCGCCT ATTGCGCCGC GAAACATGGC
GTGATCGGTC TCACGCGATC GCTCGCGCTG GAAGTCGCAA CGAAAGGTGT CACCGTCAAC
GCCGTGTGTC CCGGATACAC CGAAACCGAA CTGCTGCACG CATCGCTTGA ACAGATCACC
AGCAAGACCT CGCGCACCGA ACAGCAGGCG CGCGAAACCT TGCTTCGCTC GAATCCGCAA
CATCGCTTCG TGAGTCCGGA ACAGGTCGCC AACGCAGTGC TCTGGCTCTG CCAACCCGGC
TCGGACGCCG TCACGGGGCA ATCCATTTCC ATCTCTGGTG GAGAAGTGAT GTGA
|
|---|
| Protein sequence | MNTFSSTLAG QHAVVTGGGS GIGAAVAEAL LRAGARVTLM GRNAERLDVQ RAKCRALGDV
ACISVDVTQE DSVASAFAEA GAIDILVNNA GQAQAAPFTH TDMALWQRML DVNLTGVFLG
TRAALPGMLE RGHGRIVNVA STAGQIGYAY VAAYCAAKHG VIGLTRSLAL EVATKGVTVN
AVCPGYTETE LLHASLEQIT SKTSRTEQQA RETLLRSNPQ HRFVSPEQVA NAVLWLCQPG
SDAVTGQSIS ISGGEVM
|
|---|
| |