Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6990 |
Symbol | |
ID | 6280039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 3367557 |
End bp | 3368996 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642618013 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_001890649 |
Protein GI | 187921617 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0598431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAGAC TCAAACTCGG TGCCGGTGCA GTGGCGTTTG CGCTCGCCGT GCTCGCGGGC TGCACGCTCG ATCCGCACTA TGAACGGCCG GCGGCGCCTG TGGCGGTGGC GTATCCGCAA GGCGATGCGT ACGAAAGCAC GAGCACGGCT GCGGCCACGG TCGCAAAGAG CGCGAGCGCT ACCGTCGTGG TACCGCCGCT TGCCGTCGAT ACCGCATGGC GCAGTTTCTT TCGCGACGAA CGTTTGCAAC GATTGATCGA AATCGCGCTG GCGAACAACC GCGACTTGCG CGTGGCGGCG TTGAATGTTG CCGAATATGA AGCGCAATAC CGCATCACAC GCGCCGCGCT CGCGCCGTCG ATTAGCGCGA GCGGCAGCCT GACTCGTGAG CGGACTCAAG GCGTGACGAG TAGTGTCAGC GACCTCAACG TCGGCACGAC GTCGTGGGAA ATCGATTTCT TTGGACGCCT GCGGAGCCTG AAGCGTCAGG CGCTGGAAAA CTATCTTGCA ACAGATGCGT CGCGGCAAAG CACGCAGATC AGCCTGATCG CGACGGTGGC GACCGACTAT CTGACCTTGC TGTCCGATGA ACGCCTGTTG CAGTTGACCG AAGATACGGT CAAGGCGGAT CAGTCGACTT ACGACGTGAC GAAGCGCGTC CAGGAGTTGG GCAATTCTTC TCTGCTCGAC GTGCAACAGG CCGAGAACTC GTTGGCCAGT GCGAAGGCGA GTCTCGCGTC TTACCGTCGT GCTGTCGCGC AGGATCGCAA CAACCTGATC GCTATACTCG GCGCGCCGAT TCCCGATGAC CTCCCGCCTG CCCGCTCATT CGACGACGAG TCGATGTTCG CCGACATCGG TGCGGGCGTG CCGTCGCTGC TGCTCACCCG TCGTCCGGAC ATCGTGCAGG CGGAGCACGC GTTGAAAGCG GCGAATGCAA ACATCGGCGC CGCGCGCGCC GCGTTTTTTC CGAAGATCGA ACTGACCGCG ACGGCCGGCA CGTCGAGTTC GACGCTCTCG AGTCTGTTCA AGGCGGGCAC GGGAGCGTGG GCATTTGCGC CGAGCGTATC GGTGCCGATC TTCGATTACG GCAGCAACAA GGCGTCGCTC GATGTCGCGA AGATCGAGAA GCAGATCGAG GTCGCCGACT ATGAAAGCAC GATCCAGACG GCGTTCAAGG AAGTTTCGAA TGCGCTGACG GCGCGCGCCA CCTATGTCGA TCAGGTGCTG GCGGATCGCG AATACGTGGC GTCCTCGCAG CGGTACTACA CGTTGGCCGA AGCGCGTTAC AAGGCGGGCA CCGATAGCTT TCTCACGTTC CTCGATGCGC AGCGCACGCT CTACACCGCG CAGCAGCAGC TTGCGACCGA TACGCTGTCG CGGCAGGCGA ATCTCGTGAC TTTGTACAAG GTGTTGAGCG GCGGTTGGGA GCAGGGCTGA
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Protein sequence | MMRLKLGAGA VAFALAVLAG CTLDPHYERP AAPVAVAYPQ GDAYESTSTA AATVAKSASA TVVVPPLAVD TAWRSFFRDE RLQRLIEIAL ANNRDLRVAA LNVAEYEAQY RITRAALAPS ISASGSLTRE RTQGVTSSVS DLNVGTTSWE IDFFGRLRSL KRQALENYLA TDASRQSTQI SLIATVATDY LTLLSDERLL QLTEDTVKAD QSTYDVTKRV QELGNSSLLD VQQAENSLAS AKASLASYRR AVAQDRNNLI AILGAPIPDD LPPARSFDDE SMFADIGAGV PSLLLTRRPD IVQAEHALKA ANANIGAARA AFFPKIELTA TAGTSSSTLS SLFKAGTGAW AFAPSVSVPI FDYGSNKASL DVAKIEKQIE VADYESTIQT AFKEVSNALT ARATYVDQVL ADREYVASSQ RYYTLAEARY KAGTDSFLTF LDAQRTLYTA QQQLATDTLS RQANLVTLYK VLSGGWEQG
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