Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6890 |
Symbol | |
ID | 6279258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 3251156 |
End bp | 3254899 |
Gene Length | 3744 bp |
Protein Length | 1247 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642617917 |
Product | protein of unknown function DUF748 |
Protein accession | YP_001890553 |
Protein GI | 187921521 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00167785 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.283223 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAAGCC TCAATAAAGC ATCATTAGCC TCGTCCATGC AGACCGTGCG CAATGTCGCG CAGTCACGCC GCACCCGGCG TGTCATCACC GGTCTGCTGA TCTTCGTTGT ACTGTTTGGT CTGTTGGGCT TCTTCGCGGC ACCGCCTCTG ATTCGCCACA TTGCCGAGCA ACAGCTCAGC AAACAACTCG ACCGTCCCGC TACCATCGGC CGCATTGCGC TCAATCCGTA CACGCTCAAG CTCGAAGCCG ACCGTGTACA TATCGGCGAG CGCGGCGGCG CTGGCGACTT CGTGGATATC TCGCGGCTCA TCGTGCAGCC GTCGTGGAGT TCTCTGTTTC GCGCGGCGCC GATCATCGAC GAAGTGCAGC TCGATTCGCC GCGCTTTCAT ATTGTTCGCT ACGATGCGCA GCGCTTCAAT TTCACCGACC TGATCGAGAA ATTCTCGAAG CAGCCGGCCA AACCCGATAG CAAACCCACG CTGTTCTCCG TGTCGAACAT CAGGCTCGAA AACGGCCAGA TCACGTTCGA CGACAAACTC CTCGGCGCAA CGCATGTAAT CGATCAGTGG AAGCTCGGCA TTCCGTTCAT CGCCACGCTG CCGTCGAAAA CCGATATCTT CGTCGAGCCG TTATTGCGTG CGCGGATCGA CGGCAGTCCG CTTGCCATCG ACGGCAAGAC CAAGCCGTTC GCCGCGTCGC GCGAGTCGGA AGTGTCGTTG CGTTTCGACG GGCTCGATGT GCCGCGTCTC ATGTCGTACG TGCCGACCAA GCTGCCGGTG ATCGTGCAGT CCGGCAAACT GTCCACCGAT CTCAAGCTCA ACTTCGTGGT CTCCAACGAC GCGCCTTCGC TGCGCGTGGC GGGCACCGTC GATATGAACG ACGTGGACGT GCAGGATCAG AGCAAGGCGC CGTTCTTCGC GGCGCGCGCG CTGCATGTGG CCGCCGCGAC GCTCGAGCCG TTGAAGAACC TCTATCACTT CGACGAGATC CGCATCGACG CGCCGACCGC CAATCTTGCG CGCGATAAGG ACGGTGTGGT GAGCGTCGAG AAGATGTTCG CGCCCGCGCC CGCATCTGAA GCCGCTGCGG CGCAACGGCC GGCGAGCGCG CCACTTGCCG CATCCGGTTC TGGGGCCGCG GAAAAGACGG CGCCGCCGCT GGATCTGTCG ATCAAACGCC TGGTGCTTAA TGACGGCACC GTGAACGTCC ACGACAACGC CGCCTCGCGG CCCGTCGACG TAGGTCTGCA AAAGCTGTTC GTGACGCTGA CCGATTTTTC GACGCTCGCC ACCGCGCCTG CGCATTACAC GCTGAACACG GATTTCAAGG ACGCCGGCGG CTCGCTCGGC GTGGCGGGCG CGTTCGGCCT CGTCGCGAAG ACCGCGAGCG CGAAGGTCGA CATAAAGTCG TTGAAACTGC CGCTGTTGCA GCCGTATATC GACACGGCGA CCGTCGCGCA GATCACGGAC GGCGCGTTAT CCGCCACCGC CAATGTCGGC GCGAACTGGT CGAAGTCGCC GGCGGCGGTG ATGGTCACCG ACTCGCAACT GGACCTGCAA TCGCTGAAAG TCGCGGCGCG CGACAGCAAG AATCCGCTGA TCTCGCTCGC CCAAGGCAGC GTGAAGATCA AGCAGGTGGA TGTGGCGGCG CGCAACGCCG AGATCGCCAG CGTCGACACG ACCGGCCTCG CGGTCGATGC GCAGCGTCTG AAAGACGGCG GCATCAACCT CGCCGCGCTT GCCGGCCAGC GCGAAGCCGC GCCGCAGCGC ACCGCGATTC ACGCGGTCAA GAAGGCGCAG GCGGAAGGCC CCGCGTGGCA CTACAAGATC GGCGAACTGA ACCTGAAGGA CGCCACCGCC AATTTCACCG ACAACACCAC GCCGCAGCCG GTGAAACTGA ACATCACGTC GCTGCAGCTG AAGGTGCAGA ACGTCAGCGA CGACCTCAGC CGTCCGTTGC CGATCGATTT GCAGGCAACG CTGAACAGGA AGGGCACGCT CGGCGTAAAG GGCGACGTCA CGGCGACGCC GCTCAAGGTG GCCGTCAAGG TGAACGCCAA CCGGCTCGAC GCGGCGGCCC TCGAACCGTA CTTCGGCAGC AAGCTGAATG CGGTGGTCGC GAGCGCGCTG CTCAATGCGA ACGGCGACCT GACGCTGAAT CAGGCTAAGT CGCTGAAAGC CAATTATCAC GGTGACCTGG CGCTCGTCGA AGTCCGCATG CTCGACAAGG CGACTTCCGA CCCGTTCGCG GGATGGGGTT CGCTTGCATT GTCGAACCTG AAGGCCGATT ACGACGAGCA CGGCACGGTG GTCGACGCGG GCCGCGTCAC GTTCACCAAG TTCTATGGAC GCGTGCTGCT CGACGCGCAG GGCAAGCTCA ACCTGAAGGA CGTGGTCGCG CACGAAACCG GTGCCGCGCA ATCGCTCACG CGCGACAAGA GCGGTGCCGA ACCCGTGCCG TTGACGCCGC AACCGGCGTC GGCGGTCGCG GCCGCGCCGG CTCCATCATC GGCTGCGCCT GCCACGGTGA CGGCGGCCAC GCCGCCGTCG AGCCCGGTCA AGCTCCACTT CGGCCAACTG GTGCTGCAGC AGGGCCGTGT GACGTACACC GACAACTTCA TCAAGCCGAA TTTCACGGCA AACCTGGTCA ACATTCAGGG CACAGTCGGC GCATTCGGCA CGCAGTCCAC TACGGACGCG CCGGTCGACA TCGCCGCTAA ACTGGCGGCC AATGGCCCGC TCTCGATTCG CGGCACGGTC AATCCGCTGA TCGCGAAACC GGCGCTCGAT CTGACGGCGG TCGCGCATGA TATCGAGTTG ACCAATCTCA CGCCGTATTC GGCGAAATAT GCCGGTTATC CGATCACCAA GGGCAAGCTG AACGTCGATC TGCACTACAA GCTGGCGAAC GATCAGTTGG ACGCGAACAA CCACATCTTC ATCGACCAGC TCACGTTCGG CGATCACGTC GATAACGATA CGGCGACCAA GCTGCCTGTG CGGCTCGCAA TCTCGCTGCT GAAGAACTCG CGCGGCGAAA TCGACGTGAA CCTGCCGGTG TCGGGCTCGC TGTCGAATCC CGAGTTCAGT ATTGGCGGCC TGATCTGGCA TGCCGTGCTC AACCTGCTGC AGAAGGCGGT GACCGCGCCG TTCTCGCTGA TCGCCAACGC GTTCGGCGGC AAGGGCGAGG AGTTGGGCTA CGTCGAGTTC GAACCCGGCT CGGCAAAACT CACGGACGCC GACAACCAGA AACTCGACAC GATCGTGAAG GCACTGTCCG ACAAGCCATC GATCCGTATG GATTTGATCG GCCGCGTCGA TCCGGCGGTC GACGAACCCG CGTTGCGCAC CGGCTATGTC GATCGCCTCG TCAAGCAGCA GAAGATCAAG GACGTGGTGG GCAACGGCGA GAGCGTCGAT CTCTCGACCG TCACCGTCGA CCCGAAGGAC TACGACAAGT ATCTGAGCAA GGCCTACAAG TCGGCGGACT TCAAGAAGCC GCGCAATTTT GTCGGCCTGA CCAAGAGCTT GCCGGACGAC GAGATGAAGA GCGCGCTCGC CGCCAACGCC CCGATCGACG ACGCCAGCCT GCGGCAACTC GCGCAGCAAA GGGCGCAGAG CGTGCAGCAG TATCTGGACG GCAAGATCGA CAGCAGCCGC GTGTTTATCG TCGCGCCGAA GCTGAACGCC GACGGCATCA AGGACAAGGG CGCAACGACG CGGGTCGACT TCGGTTTGAA GTGA
|
Protein sequence | MASLNKASLA SSMQTVRNVA QSRRTRRVIT GLLIFVVLFG LLGFFAAPPL IRHIAEQQLS KQLDRPATIG RIALNPYTLK LEADRVHIGE RGGAGDFVDI SRLIVQPSWS SLFRAAPIID EVQLDSPRFH IVRYDAQRFN FTDLIEKFSK QPAKPDSKPT LFSVSNIRLE NGQITFDDKL LGATHVIDQW KLGIPFIATL PSKTDIFVEP LLRARIDGSP LAIDGKTKPF AASRESEVSL RFDGLDVPRL MSYVPTKLPV IVQSGKLSTD LKLNFVVSND APSLRVAGTV DMNDVDVQDQ SKAPFFAARA LHVAAATLEP LKNLYHFDEI RIDAPTANLA RDKDGVVSVE KMFAPAPASE AAAAQRPASA PLAASGSGAA EKTAPPLDLS IKRLVLNDGT VNVHDNAASR PVDVGLQKLF VTLTDFSTLA TAPAHYTLNT DFKDAGGSLG VAGAFGLVAK TASAKVDIKS LKLPLLQPYI DTATVAQITD GALSATANVG ANWSKSPAAV MVTDSQLDLQ SLKVAARDSK NPLISLAQGS VKIKQVDVAA RNAEIASVDT TGLAVDAQRL KDGGINLAAL AGQREAAPQR TAIHAVKKAQ AEGPAWHYKI GELNLKDATA NFTDNTTPQP VKLNITSLQL KVQNVSDDLS RPLPIDLQAT LNRKGTLGVK GDVTATPLKV AVKVNANRLD AAALEPYFGS KLNAVVASAL LNANGDLTLN QAKSLKANYH GDLALVEVRM LDKATSDPFA GWGSLALSNL KADYDEHGTV VDAGRVTFTK FYGRVLLDAQ GKLNLKDVVA HETGAAQSLT RDKSGAEPVP LTPQPASAVA AAPAPSSAAP ATVTAATPPS SPVKLHFGQL VLQQGRVTYT DNFIKPNFTA NLVNIQGTVG AFGTQSTTDA PVDIAAKLAA NGPLSIRGTV NPLIAKPALD LTAVAHDIEL TNLTPYSAKY AGYPITKGKL NVDLHYKLAN DQLDANNHIF IDQLTFGDHV DNDTATKLPV RLAISLLKNS RGEIDVNLPV SGSLSNPEFS IGGLIWHAVL NLLQKAVTAP FSLIANAFGG KGEELGYVEF EPGSAKLTDA DNQKLDTIVK ALSDKPSIRM DLIGRVDPAV DEPALRTGYV DRLVKQQKIK DVVGNGESVD LSTVTVDPKD YDKYLSKAYK SADFKKPRNF VGLTKSLPDD EMKSALAANA PIDDASLRQL AQQRAQSVQQ YLDGKIDSSR VFIVAPKLNA DGIKDKGATT RVDFGLK
|
| |