Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6889 |
Symbol | |
ID | 6278163 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 3249602 |
End bp | 3251149 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642617916 |
Product | transcriptional regulator, GntR family with aminotransferase domain |
Protein accession | YP_001890552 |
Protein GI | 187921520 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0343806 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.248624 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGGACACCG TGATCTTGTC GGATTGGCTC GCCGCGCGGC TCGACCGCAC GGCGGCCGAA CCGGTCTACC GGCAGACCTT GCGGCTCATG CAGCAGGCGA TCCTGACCGG CCAGTTGCCG CCGGGCACCA AGCTGCCCAG CTCGCGTACG CTCGCCGAAG ACCTCGGCAT CGCGCGCAAC ACGGTGCTGC ACGTCTACGA CCAGTTGACC GCCGAAGGCT ACGTGATCTC GACCACCGGC AGCGGCACCT ACGTCGCCGA CACGCGCCCG GACACCGCCG CCGTGAACAT GCGCCGGAAG CCGGCAGTGG CGAGCGTCGA CAAAGAAGAC AGCACAGCCA GGGAAACCAC CAAGCCGCCG AAACGCGATC TCAACGATCT GTCGGCTCGC GGACGGCGTC TGATCGACAA AGCCGGCGTG TCCGCCAAAC AGTGGGGCGC GTTCATGCCA GGCGTGCCCG ACGTCGCGGA ATTTCCGGCG CGCACATGGA GCCGCCTGCA GGCTCGTTTG TGGAAGGAAG CCAATCCCGA CCTGCTCACT TACGCGCCTG GCGGCGGCTA TCGGCCATTG CGGCGGGCGT TGTCGGATTA CCTGCGCGTG GCGCGTTCGG TGAATTGCAC GCCGGATCAG ATCATCATCA CCACGGGCAT TCATCAATCG ATCGATCTGG CGGTGCGCCT GTTGACCGAT GTCGGCGACC GCGCGTGGGT GGAAGAACCG TGTTATTGGG GCGCACGCAG CGTGCTGCAG TCATCGGGGA TTACCCTCGT GCCCGTGCCG GTGGATGACG AAGGTCTGAA TCCGAGCGAG CAGGACCTGC AACAGCCGCC GCGCCTCGCG CTCGTCACGC CGTCGCATCA GTATCCGCTC GGCATGGTGA TGAGCCTCGC GCGCCGCCGC ACGCTGCTCG AATATGCGCG TCAGCACAAT GTGTGGATCA TCGAGGACGA CTACGACAGC GAGTTCCGCT ACGGCAGCCG TCCGCTCGCG TCGCTGCAAG GACTCGACGA AGCCGGCCAG GTGATCTACG TGGGCAGTCT GGGGAAGATG CTGTTTCCGG GTTTGCGGAT CGGCTACATG ATCGCGCCGG AGCATCTGGT GGACACGTTC CGCACGGGCG TGGCCGAGTT GTATCGCGAA GGTCAGTTGA TGCAGCAGGC GGTGATGACC GAGTTCATCA TGGACGGCCA TCTCACCTCG CACGTTCGGC GCATGCGTGC GCTCTACGGT GAGCGGCGGC AGATTCTGAT CGATGCGATC ACCGCGCGCT TCGGCAGCGA ACTGCCGGTG ATGGGTGACG AGGCCGGCCT GCATCTGGTG CTCGGCCTGC CGGATCACGC GAACGATCGC GCGGTGACTG CCGCCGCTTA TGACGCCGGC GTGATCGTGC GTCCGCTCGC GAGCTATTAC AGCAGCGATA CGCCCGCGCG TCGCGGGCTG CTGCTCGGCT ATGCGTGCGT GCCGAACGAC AAGATCGGTC CCGCCTTCGA CACGCTCGCG CGCGTGATCG AGCAAACCGC GTTGAAGGCG CCGACGCGCG CCGCTTGA
|
Protein sequence | MDTVILSDWL AARLDRTAAE PVYRQTLRLM QQAILTGQLP PGTKLPSSRT LAEDLGIARN TVLHVYDQLT AEGYVISTTG SGTYVADTRP DTAAVNMRRK PAVASVDKED STARETTKPP KRDLNDLSAR GRRLIDKAGV SAKQWGAFMP GVPDVAEFPA RTWSRLQARL WKEANPDLLT YAPGGGYRPL RRALSDYLRV ARSVNCTPDQ IIITTGIHQS IDLAVRLLTD VGDRAWVEEP CYWGARSVLQ SSGITLVPVP VDDEGLNPSE QDLQQPPRLA LVTPSHQYPL GMVMSLARRR TLLEYARQHN VWIIEDDYDS EFRYGSRPLA SLQGLDEAGQ VIYVGSLGKM LFPGLRIGYM IAPEHLVDTF RTGVAELYRE GQLMQQAVMT EFIMDGHLTS HVRRMRALYG ERRQILIDAI TARFGSELPV MGDEAGLHLV LGLPDHANDR AVTAAAYDAG VIVRPLASYY SSDTPARRGL LLGYACVPND KIGPAFDTLA RVIEQTALKA PTRAA
|
| |