| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6854 |
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| Symbol | sdhA |
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| ID | 6278435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3204789 |
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| End bp | 3206564 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642617881 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001890517 |
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| Protein GI | 187921485 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.232059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCAA TCAAGAATTC TCTGCCGCGT CGCAAGTTTG ACGTGGTTAT CGTCGGCGCA
GGCGGCTCGG GGATGCGCGC TTCGCTGCAA CTCGCGCGCG CCGGTCTGTC GGTCTGCGTG
CTGTCCAAAG TGTTCCCGAC GCGATCGCAC ACGGTTGCTG CTCAAGGCGG CATCGGCGCA
TCGCTTGGCA ACATGAGCGA AGACAATTGG CACTACCACT TCTACGACAC GATCAAGGGT
TCCGACTGGC TCGGCGACCA GGACGCGATC GAGTTCATGT GCCGCGAAGC ACCGAACGCC
GTGTACGAAC TCGAACACAT GGGCATGCCG TTCGACCGTA ACGCGGACGG CACGATTTAC
CAGCGCCCGT TCGGCGGCCA CACCGCGAAC TACGGCGAAA AGCCGGTGCA ACGCGCTTGC
GCGGCGGCTG ACCGCACCGG TCACGCGCTG CTGCACACGC TGTATCAGCA AAACGTCGAG
GCCAAGACGC AGTTCTTCGT CGAATGGATG GCGCTGGATC TGATCCGCGA CTCCGAAGGC
GACGTGCTCG GCGTGACCGC GCTGGAAATG GAAACCGGCG ACGTCTACAT TCTCGAAGGC
AAGACCACGC TGTTCGCCAC GGGCGGCGCG GGCCGGATCT TCGCGGCATC CACCAACGCG
TTCATCAACA CCGGCGACGG TCTGGGCATG GCGGCGCGTT CGGGCATCGC GCTGCAAGAC
ATGGAATTCT GGCAATTCCA CCCGACCGGC GTGGCCGGTG CGGGCGTGCT GATTACCGAA
GGCGTGCGCG GCGAAGGCGG CATTCTGCGC AACTCGAACG GCGAGCGTTT CATGGAACGC
TACGCGCCGA CGCTGAAGGA TCTGGCGCCG CGTGACTTCG TGTCGCGTTC GATGGACCAG
GAAATCAAGG AAGGCCGCGG CGTGGGTCCG AACAAGGATC ATGTGCTGCT CGACCTGTCG
CACATTGGCG CCGAGACGAT CATGAAGCGT CTGCCGTCGA TCCGCGAAAT CGCGCTGAAG
TTCGCGAACG TCGATTGCAT TAAAGAACCG ATCCCGGTCG TGCCGACCAT CCACTATCAG
ATGGGCGGTA TTCCGACGAA CATCAACGGC CAGGTCGTGG GTACGTCGAG GGGCGCTGAA
GATCCGGTCA ACGGCTTCTA CGCAGTGGGC GAATGCTCGT GCGTGTCGGT GCACGGTGCA
AACCGTCTCG GCACGAACTC GCTGCTCGAC CTGGTGGTGT TCGGCCGCGC GGCCGGCAAC
CACATCGTCA AGCACGTGAA GGAAATCAAG GAGCACAAGC CGCTGCCGGC CGACGCCGCT
GATTTCGCGC TGTCGCGTCT GGCGAAGCTC GACAGCTCGT CTTCGGGCGA GTACGCGCAA
TCGGTCGCGA ACGACATTCG CGGCACGATG CAGAAGCACG CCGGCGTGTT CCGCACCTCA
GCGCTGCTGG CCGAGGGCGT GGAGCGCATT CGCGAAGTGG CTGACCGTGT CGACAACATC
CATTTGAAGG ACAAGTCGAA GGTGTTCAAC ACCGCGCGCG TCGAAGCGCT GGAAGTGGCG
AACCTGATCG AAGTGGCACG CGCCACGATG GTTTCCGCCG AAGCGCGTAA AGAAAGCCGT
GGCGCGCACG CGCAAAACGA CTTCGAACAT CGCGACGACG AAAACTGGAT GCGCCATACG
CTGTGGTTCA GCGAAGGCGA TCGCCTTGAC TACAAGCCGG TTCACATGCA ACCGCTGACG
GTCGAATCGG TTCCGCCGAA AGCGCGGACC TTCTAA
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| Protein sequence | MAAIKNSLPR RKFDVVIVGA GGSGMRASLQ LARAGLSVCV LSKVFPTRSH TVAAQGGIGA
SLGNMSEDNW HYHFYDTIKG SDWLGDQDAI EFMCREAPNA VYELEHMGMP FDRNADGTIY
QRPFGGHTAN YGEKPVQRAC AAADRTGHAL LHTLYQQNVE AKTQFFVEWM ALDLIRDSEG
DVLGVTALEM ETGDVYILEG KTTLFATGGA GRIFAASTNA FINTGDGLGM AARSGIALQD
MEFWQFHPTG VAGAGVLITE GVRGEGGILR NSNGERFMER YAPTLKDLAP RDFVSRSMDQ
EIKEGRGVGP NKDHVLLDLS HIGAETIMKR LPSIREIALK FANVDCIKEP IPVVPTIHYQ
MGGIPTNING QVVGTSRGAE DPVNGFYAVG ECSCVSVHGA NRLGTNSLLD LVVFGRAAGN
HIVKHVKEIK EHKPLPADAA DFALSRLAKL DSSSSGEYAQ SVANDIRGTM QKHAGVFRTS
ALLAEGVERI REVADRVDNI HLKDKSKVFN TARVEALEVA NLIEVARATM VSAEARKESR
GAHAQNDFEH RDDENWMRHT LWFSEGDRLD YKPVHMQPLT VESVPPKART F
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