| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6809 |
|---|
| Symbol | |
|---|
| ID | 6278200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3145291 |
|---|
| End bp | 3146370 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642617838 |
|---|
| Product | porin gram-negative type |
|---|
| Protein accession | YP_001890474 |
|---|
| Protein GI | 187921442 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.357402 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0000584942 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGAC TTTTTAGATG CATGGCAAGG CTGACTGCGT GCATCGGCGC GATATTCGTC
ATAGAGAGCG CGTGCGCGCA AAGCAGCGTC ACGCTATACG GTCGTCTTGA CGCCGGCCTC
CTGTACACAA GCCGGACATT CGACGTGAAA AGCGGCAGGA ATGGCGGACG TCAACTGTCG
GTCATCGACA GCGGGGCTTC ACCCACGTTA TTCGGACTGC GAGGTGTCGA GAACATTGGC
GGAGGAACCA AGGTTCTTTT CACCCTCGAA AGCGGTGTCA ACCTGATGGA TGGAGGTTTC
AAAAATTCCA ATGGAAATCT GTTCGGGCGC CAGGCATTTG TCGCATTGGC GGGTCCTTAT
GGTCAAGCGA AATTCGGCCT GCAATTCTCG CCATTCTTCT TGGCCTTATT TGAGACTGAC
CCGCGAGGGT TTTCGCAGTT CGGCAGCGGC CTCGTCAATT ACGTCAATAA CGTGCTGGGC
ACCGGCGCAT TCAACGCCAA TGGAATTTCC TACGCGAGCC CCTCTATTGG AGGGTTTGAA
GGCAGCGCGC TTGTCGCTTT GGGCGGAAAG CCTGGCGACT ATCAGGCCGG CAGGCAGTAT
TCCGCAAGCC TGAAATACCA GAACGGCAAC TTCATGGTCA ATGCGGCGTT GTATTCGGGA
ATCGGCGGCG GAACGGTGTC AACGCCTATT CCAACGACGC TTCAATTCTC AGGCCGCACT
GTCGGCACGG TCTACAAGTT CGGTGCCGTC TCCGCAAAGG CGCAGTTCGT CAATTACAAG
GTCGCAGGAT CGTTCAACTC GAACCTTTAT GGTCTGGGCG TGGATTGGAA TGCGACGCCC
GCGCTGAACC TGAACGGTGG CGTGTACTAC AGAATGGACC AAAACGATTC GGCGAATTCG
TCGATCATGG GTGCGATAGG CACTGTTTAT TCATTGTCCG TGCGAACCGC ACTCTATGCG
CAGGTGGCAG CGATCAACAA CCGTGGTGCG ATGAATAGCG GTCTCGCCAT CGGCTACGCG
TTATATGGCT TGCAAGGCAC GACGACTGGA GCAACGATCG GCATTCGCCA TAACTTTTGA
|
|---|
| Protein sequence | MNRLFRCMAR LTACIGAIFV IESACAQSSV TLYGRLDAGL LYTSRTFDVK SGRNGGRQLS
VIDSGASPTL FGLRGVENIG GGTKVLFTLE SGVNLMDGGF KNSNGNLFGR QAFVALAGPY
GQAKFGLQFS PFFLALFETD PRGFSQFGSG LVNYVNNVLG TGAFNANGIS YASPSIGGFE
GSALVALGGK PGDYQAGRQY SASLKYQNGN FMVNAALYSG IGGGTVSTPI PTTLQFSGRT
VGTVYKFGAV SAKAQFVNYK VAGSFNSNLY GLGVDWNATP ALNLNGGVYY RMDQNDSANS
SIMGAIGTVY SLSVRTALYA QVAAINNRGA MNSGLAIGYA LYGLQGTTTG ATIGIRHNF
|
|---|
| |