Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6787 |
Symbol | |
ID | 6278252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 3123570 |
End bp | 3124919 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642617816 |
Product | NADH dehydrogenase |
Protein accession | YP_001890452 |
Protein GI | 187921420 |
COG category | [C] Energy production and conversion |
COG ID | [COG1252] NADH dehydrogenase, FAD-containing subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000879358 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.00000494045 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCATCGTT TTATCGTCGT TGGCGGAGGC GCGGGGGGAT TGGAGCTGGC GACGCGTTTG GGCGATCGCT ATGCACCCCA CAAGAACAAG GGCGGTGTGC AGGCGCAGGT CACGCTCGTC GACCGCAACC CCACTCATAT CTGGAAGCCG CTGCTGCATG AAGTGGCGGC GGGCAGCATG GACCCGTTCA CGCAGGAACT CGAGTATGCG GCGCAAGCGC GTTGGCACGG CTTCGAATTT CAGCAGGGCG ACCTGACGGG GCTGGACCGC GCGAATAAGC GCCTCACGCT CGGCACCGTG CTCGACGACG ACGGCGCCGA GTTGCTGCCC GAACGCCAGC TCGAATACGA CACGCTGATC ATCGCGATCG GCAGCACGAC CGCCTTCTTC GGCGTCAAAG GCGCGCCTGA ATTTTCCCTC GCACTCGACA CCGTGAGCCA GGCCGAGCGT TTTCGCAAAC GTCTGATCGC GGCCTGCATG CGCGCGGAGC ATCAGGTGCA TGAACCGGTC GAGGCAGCGC CGGCCGTTGG CGCGCCCGGC GAGCCGCGCA TTCAGGTGGC GATTGTCGGC GGCGGCGCGA CGGGCGTGGA ACTGTCGGCG GAATTGCGCA ACACGGCGCA GGTGCTGTCC GCCTACGGTC TGCACAAGCT CGATCCGCGG CATGACGTCG GCATCGTGCT GATCGAAGCA GGGCCGCGGA TTCTGCCGGC TTTGCAGGAG CGCGTTTCGA CCGCCACGGC CGAACTGCTC ACCAAGCTCG GCGTGAAGCT GATGATCGGC GAGACCGTGG CCGAAGTCGC GCCCGGCATG ATCCGCACTG CCAGCGGCAA AACCGTGCGC GCCGATCTGA CGGTGTGGGC GGCCGGCATC AAGGCGCCGG CGATTCTGAG CGAGCTCGAC GGCCTGCCTG TCAATCGGCT GGGCCAGCTC ATCGTGCGTC GCACGCTGCA AACCGAAACC GACGATAACG TCTTCGCGCT CGGCGATTGC GCGGCGTGCC CGTGGCCGGG CAACGAGCGC AACGTGCCGC CGCGCGCGCA GGCGGCTCAC CAGCAAGCGA GCTTCCTGAT GAAGGCGCTG GCAGCGCGGC TCGAAAACAA GCCGCTGCCG GAGTTTACCT ATCGCGACTT CGGGTCGCTG GTGTCGCTCG GGCATTTCAG CGCGGTTGGT AATCTGATGG GCGGGGTGAT CGGCGGCAAC ATGCTGATCG AAGGGCTGTT CGCGCGCTTC ATGTACATGT CGCTGTACCG GCTGCATATC GCCGCGCTGC ACGGCTACGC GCGGATGGTG CTCGACACCT TTGCCCACTG GTTGCGCCGT ACCACGCTAC CGCGGGTCAA GCTGCACTGA
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Protein sequence | MHRFIVVGGG AGGLELATRL GDRYAPHKNK GGVQAQVTLV DRNPTHIWKP LLHEVAAGSM DPFTQELEYA AQARWHGFEF QQGDLTGLDR ANKRLTLGTV LDDDGAELLP ERQLEYDTLI IAIGSTTAFF GVKGAPEFSL ALDTVSQAER FRKRLIAACM RAEHQVHEPV EAAPAVGAPG EPRIQVAIVG GGATGVELSA ELRNTAQVLS AYGLHKLDPR HDVGIVLIEA GPRILPALQE RVSTATAELL TKLGVKLMIG ETVAEVAPGM IRTASGKTVR ADLTVWAAGI KAPAILSELD GLPVNRLGQL IVRRTLQTET DDNVFALGDC AACPWPGNER NVPPRAQAAH QQASFLMKAL AARLENKPLP EFTYRDFGSL VSLGHFSAVG NLMGGVIGGN MLIEGLFARF MYMSLYRLHI AALHGYARMV LDTFAHWLRR TTLPRVKLH
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