Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6782 |
Symbol | |
ID | 6278559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 3118814 |
End bp | 3119695 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642617811 |
Product | Polyprenyl synthetase |
Protein accession | YP_001890447 |
Protein GI | 187921415 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.750259 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0000580202 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACATTCG AACAATGGAT GCGCTCGGTA CTGGAGCGCG TCGAAACGGC ACTGGAATAT TACCTGCCGA CCGAGGCAAC CGAGCCCGCC ACGCTGCATG AAGCCATGCG CTACGCGGTG CTGGGCGGCG GCAAGCGGGT TCGCCCGCTC TTGTGCCACG CGGCCGGCGA GCTGACCGGC GCGCGCGCCG AGTGCCTCGA CGCGGCGGCT GCTGCGCTGG AGATGATCCA TGTGTACTCG CTCGTCCACG ACGACATGCC GTGCATGGAC GACGATGCAC TGCGTCGCGG CAAGCCTACC GTACACGTCA AATATGACGA AGCGACGGCA CTGCTGGTTG GCGACGCGCT GCAATCGCAG GCGTTCGTTT CGCTGACGTC GGACGTTCTG GCCCCGGCGC AGCAGGCCGC GCTGGTGCGC GAACTGGCGC TGGCGAGCGG CTCGATCGGC ATGTGCGGCG GGCAGGCCAT CGATCTGGCT AGCGTCGGCC ATACGCTGAC ACGCACGCAA TTGGAAACCA TGCACCGCAT GAAGACCGGC GCCTTGCTGC GCGCCGCAGT GCGCATGGGT GCACTGGCGG GCGAAACGCC GGACGCGGAC GCCATGCGTT CGCTCGACGC GTATTCGGCC GCTGTCGGCC TCGCGTTTCA GGTCGTCGAC GATATTCTCG ACGTCACGAC CGATTCGGCG ACGCTCGGCA AAACGGCAGG TAAAGACGCG AAGGACGGCA AGCCGACCTA CGTGTCGATT ATTGGGCTCG ACGCATCGCG CGCGCTCGCG GCGCAGTTGC GCAGCGACGC TCACGCCGCG CTGGCGCCGT TCGGCGCACG CGCGCAGCGT CTTGCCGAAT TGGCCGACCT GGTGGTGAAC CGGGTTAGCT GA
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Protein sequence | MTFEQWMRSV LERVETALEY YLPTEATEPA TLHEAMRYAV LGGGKRVRPL LCHAAGELTG ARAECLDAAA AALEMIHVYS LVHDDMPCMD DDALRRGKPT VHVKYDEATA LLVGDALQSQ AFVSLTSDVL APAQQAALVR ELALASGSIG MCGGQAIDLA SVGHTLTRTQ LETMHRMKTG ALLRAAVRMG ALAGETPDAD AMRSLDAYSA AVGLAFQVVD DILDVTTDSA TLGKTAGKDA KDGKPTYVSI IGLDASRALA AQLRSDAHAA LAPFGARAQR LAELADLVVN RVS
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