Gene Bphyt_6584 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6584 
Symbol 
ID6277725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2882060 
End bp2884057 
Gene Length1998 bp 
Protein Length665 aa 
Translation table11 
GC content63% 
IMG OID642617617 
ProductRNA polymerase, sigma 70 subunit, RpoD 
Protein accessionYP_001890254 
Protein GI187921222 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000125379 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0159529 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCCTT TTGATCGCGA AGATTCGCAA CACGAAACCG CCGCCTACAC CGCCAAAGCG 
CCTTCGGGCC GTACGGCCAA GGGCAAGGGC GCCGGTAAAG CGATCCCCGT GGCAGCCGAA
CTGCCGCCGC AGCAAGCCGA AGAACGTCAG CGCCAGATGC GCGCGCTGAT CCAGCTGGGT
AAGGAGCAAG GCTACCTGAC CCACGCGCAG ATCAACGACC ACCTGCCCGA CAACTTCGCG
CAGACGGCCG CTATCGACAG CATCGTCAGC GCGTTCAACG ACATGGGCGT GCAGGTCTAC
GAACAGGCGC CGGACGCGGA AACGCTGCTG CTCAACTCGA ACGCCCCGGC CGTCGTGTCG
GACGATCAGG CGGACGAGGA AACCGAAGTC GCCCTGTCCA CCGTCGATTC CGAATTCGGC
CGCACGACCG ACCCGGTGCG CATGTACATG CGTGAAATGG GCGCGACCGA GCTGCTGACG
CGCGCCGGCG AAATCGCGAT TGCGAAGCGC ATCGAAGACG GCCTGCATGA AATGGTGCAG
GCGATCGCCG CTTGCCCGCT CGCGATCTCG GCCATTCTGG CGAGCGCCCA GCAGGTTGCC
GACGGCGAGT TGCGCATCGA CGAACTGGTC GACGGTCTGA ATGAAGACAC CCTCGCCGCT
GAAGAAGACA GCACCGGCGC GGACGCATCT GCCGACGTCG ACGCCGACAC GGACAGCGAC
GACGACGAAG ACAGCGACGA CGACGTCGGC CCGGCGGATT CGTCGGCGGC GGACGAAGCG
CGCCTGAAGC AACTCACGAG CGACTGCCTC GAAATCTTCG CGCAGGTCGG CATGCTGTCC
GACCAGATGA ACGCATCGCA CACGCGCGGC GACGTCACCT CGAAGGCGTA CCAGCGTGCA
CGCGAAGAAA TCCAGCAGCA CCTCGCGAAG ATCCGCTTCA CGGCACGCAC CATCGACCGC
CTGTGCGGCG ACGTGCAGCA ACAGGTCGCG CAAGTTCGCG CGATCGAGCG CAACATTCTG
CAAATCGTCG TCTCGAAGAG CGGCATGCCG CGCGAGAAGT TCATCGAGTC GTTCGCCGGC
CATGAAGCCG ACCTCGGCTG GACGGAACGT GCGGCGCGCG GTGCGTCGTC GTACGGCGCG
GCGCTGGAGC GCCATTTGCC GGCAATTCAG TCCGAACAGC AAAAGTTGAT CGAAATCGAA
GCAACGGTTT CGCTGCCGCT GAAGCATCTG AAAGAGATCA ACCGCCAGAT GGTCGCGGCT
GAATCGAAGA TGCGCAAGGC GAAGAGCGAG ATGATCGAGG CGAATCTGCG TCTCGTGATC
TCGATCGCGA AGAAGTACGT GAACCGCGGC ATGCTGTTCC TCGATCTGAT CCAGGAAGGC
AACATCGGCT TGATGAAGGC GGTGGACAAG TTCGAATACC GTCGCGGCTG GAAGTTCTCC
ACGTACGCAA CGTGGTGGGT CCGCCAGGCG GTGACGCGTT CGCTCGCCGA CCAGGCTCGC
ACGATCCGCG TGCCGGTGCA CATGATCGAA ACGATCAACA AGCTGAACCG CATTTCGCGC
GAAATCCTGC AGCAGACCGG TCAGGAAGCG CATCCGTCCG TGCTCGCGGA ACGCATGGAA
CTCTCGGAAG AGAAGGTGCG CGGTATTCTG AAGATCGCGA AGCAGCCGGT ATCGATGGAA
ACGCCGGTCG GCGACGACGG CGACGCCACG CTCGGCGACA TGATCGAAGA CTCGGCAGCG
TCCTCGCCGG CCGACGCCGC GATGCAAGCC GACTTGCGCG CCGCCATCGA CGACGCGCTC
GACTCGCTGT CGCCGCGCGA AGCCAAGGTG CTGCGTATGC GTTACGGCAT CAATACGAAG
TCGGACCACA CGCTCGAAGA AGTCGGCAAG CAGTTCGACG TCACGCGTGA ACGGATTCGT
CAGATCGAGA GCAAGGCCAT GCGCAAGCTG ATGCACCCGA GCCGCGCGGA CCGCCTGAAG
TCGTTCCTCG ACCGCTAA
 
Protein sequence
MNPFDREDSQ HETAAYTAKA PSGRTAKGKG AGKAIPVAAE LPPQQAEERQ RQMRALIQLG 
KEQGYLTHAQ INDHLPDNFA QTAAIDSIVS AFNDMGVQVY EQAPDAETLL LNSNAPAVVS
DDQADEETEV ALSTVDSEFG RTTDPVRMYM REMGATELLT RAGEIAIAKR IEDGLHEMVQ
AIAACPLAIS AILASAQQVA DGELRIDELV DGLNEDTLAA EEDSTGADAS ADVDADTDSD
DDEDSDDDVG PADSSAADEA RLKQLTSDCL EIFAQVGMLS DQMNASHTRG DVTSKAYQRA
REEIQQHLAK IRFTARTIDR LCGDVQQQVA QVRAIERNIL QIVVSKSGMP REKFIESFAG
HEADLGWTER AARGASSYGA ALERHLPAIQ SEQQKLIEIE ATVSLPLKHL KEINRQMVAA
ESKMRKAKSE MIEANLRLVI SIAKKYVNRG MLFLDLIQEG NIGLMKAVDK FEYRRGWKFS
TYATWWVRQA VTRSLADQAR TIRVPVHMIE TINKLNRISR EILQQTGQEA HPSVLAERME
LSEEKVRGIL KIAKQPVSME TPVGDDGDAT LGDMIEDSAA SSPADAAMQA DLRAAIDDAL
DSLSPREAKV LRMRYGINTK SDHTLEEVGK QFDVTRERIR QIESKAMRKL MHPSRADRLK
SFLDR