Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6574 |
Symbol | |
ID | 6280430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 2866221 |
End bp | 2867429 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642617602 |
Product | ABC branched chain amino acid family transporter, periplasmic ligand binding protein |
Protein accession | YP_001890244 |
Protein GI | 187921212 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0289492 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.00954732 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAATCGCC GAAATATGTT GAAGCTGGCC GCATTGTCGG CCGTTCCGGG GACGTTGGGC TCGCTGGTCG CGCGAAGCGC GTTCGCGCAG GCCGGCGCCT TGCAGTTCGC CTGTCCGGTG CCGATGTCGG GTCCATTCGC GGCGAACGGC AAATACGCCG ACCTCGGCAT GAAGCTCGCT ATCGAGCAGT ACGGCAAGGT GTTGGGTCAG CCGCTCGCAT ACACGGTGCT CGACACGGAA GGCAAGCCCG CAACCGCTGT GCGCCGAGTG CAGGAAATCG CGCAACAGAA GAATGCGCGC TTCTTTGCCG GTGGTATTTT GTCCTCCGAA GCATTGGCAA TGGGTAAGGA AGTCCAGAAA GCAGGCGGCA TTTTCATCAC GACGGCCGGC GCGGACGAAA TCACCGGCAA GGACTGCAAC GACGCCACAT TCCGCTGGTC GGTGCCGACC TACGGCGCGA TCGAGCAGAC GGTGCGTCCG TTGATCCAGA TGATGCCCAA GGCCAAACGC TGGTACACCA TCACGCCGCA ATACGTGTTC GGCGACGGTT TGCTCTCGGC CGCGAAGACG ATCTTCAAGG AGAAGGGCAT CGAACATGTA GGCAACAGCT ATCACTCGCT CAATGAGAAA GAGTTCAGCG GCTATCTGAC GAACGCAGTC GCGGCGAAGC CTGACGTACT GCTTATTCTG AACTTCGGCT CGCAATCGTC CGATACGTTG CGCCAGGCCG TGAGCTTCGG CATGAAGAAC AATTGCACGA TTCTGATGGC TTGGGCGTCC GGACTCGAGC AATTCGAATC GCTCGGTGCG GACCTGTGCG AAGGCGTCTA TTTTGGCGCG CAGTATTGGC ACGACATCGA TTCGCCGCTG AACCGCGATC TCGTCAAACG CGCGAATACC GCATTCAAGG CAAACCCTAA CTACAGCCTT GCAGGTTCGT ATATCTGTAC GAAGATCCTA CTCGACGGCA TCGTGAAAGC AGGTAACGTC GATCCGAAGA AAGTGGTTGC CGCACTCGAA GGCATGAAAT ACGACGGTTT GACCGGCCCG GAAGAAGTCC GCAAAGGCGA CCATCAGGTG TTGAAGAACT ATTATCTGTT GAAGGGCAAG GCGAAGAACA AGATGAAAAA CGCCGACGAC TACGCGGATA TCGTGAGCTC CGGCCAATCG TTCCTGCCGC TCGACAAAAC CGGCTGCAAG ATGGCCTGA
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Protein sequence | MNRRNMLKLA ALSAVPGTLG SLVARSAFAQ AGALQFACPV PMSGPFAANG KYADLGMKLA IEQYGKVLGQ PLAYTVLDTE GKPATAVRRV QEIAQQKNAR FFAGGILSSE ALAMGKEVQK AGGIFITTAG ADEITGKDCN DATFRWSVPT YGAIEQTVRP LIQMMPKAKR WYTITPQYVF GDGLLSAAKT IFKEKGIEHV GNSYHSLNEK EFSGYLTNAV AAKPDVLLIL NFGSQSSDTL RQAVSFGMKN NCTILMAWAS GLEQFESLGA DLCEGVYFGA QYWHDIDSPL NRDLVKRANT AFKANPNYSL AGSYICTKIL LDGIVKAGNV DPKKVVAALE GMKYDGLTGP EEVRKGDHQV LKNYYLLKGK AKNKMKNADD YADIVSSGQS FLPLDKTGCK MA
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