| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6082 |
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| Symbol | |
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| ID | 6277946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2319383 |
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| End bp | 2321374 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642617142 |
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| Product | proprionate catabolism activator, Fis family |
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| Protein accession | YP_001889785 |
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| Protein GI | 187920753 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCACAC CTCCTTTCGA ACCCGTCCAG CGCCCCCGCA TCTGGGCCGT GAGTATCAGC
CGCCTGCGCG ATCTGTTTTT CGACATCGCG GGCGAATACG TGGAACGCGC GGACCTGCGC
ATCGTCTCGC ACGGTTTCGA AGACGCCGTG CGCGAGATCG ACGCCGCAGG CGCCGGTCGC
CCGGATGTCG TGATTGCCGG CGGCTCGAAC GGCGCGTATC TGAAGACACG CGTGTCGGTG
CCGGTCGTGT TGATCGGCCC GACCGGCTTC GACGTGATGC ATGCGCTCGC GCGGGCGCGA
CGCGACGGAG CAAAGGTCGC CCTCGTTACG CACGGCAACA CGCCTGACGA AGTGCGCCGC
TTCGTCGCCG CCTACGCGCT CGACGTCACC TTCGCCTCTT ATCAATCGGC GCAGCACGCG
GAGAGCGTCG TGCTCGATCT GCGCGATCGC GGCATCGACG TGGTGGTCGG TCCTGGAATG
GTCACCGATC TCGCGGCGAA TGCCGGCATG GGTGCGGTGT TCCTGTACTC GCGCGCGTCG
GTGCGCGCGG CCTTCGACAC CGCGCTCGAA GTCGCGCAGG CCACGCGGCG CGAAACGATC
CGGCGTCAAC GGCTCGACAA TCTGCTGCAG CATCTGCGCG ACGGCGTCGT CGCGCTCGAC
GCGCAAGGCC GCGTCGAAGC GATGAACCAG CGCCTCGCCG GCGTGCTCGG CCTCGAAGCG
GCGAAGGCCG TGGGCCGCGT GCTGCTCGAA CTCGCGCCCG ATCTCGCGGG CAGCCTGCCG
GACGCGGACG GCGACGCGTT GTGTACGGTG CGTGGCGTGA GCTATGTCGT GCATCGCGGG
CCGCTGGCGA GCAGCAGCGC GGCGGCGGGC ACGGTGCTGA CGTTTCAGGA ATCGCGCGCG
GTCGAGCGGC TCGACCGCAC CTTGCGTTCA CGCCAGCGCG TGCAGCAGTT CAGCGCGCGT
TACCGGCTCG ACGATATTGT CGGCGCGTCC GATTCGATCG AACGCGTGCG CGCGCTGGTG
CGGCGCTATG CCCGTTCGGA CGCCACCGTG CTGATTCTCG GCGAGAGCGG CACGGGCAAG
GAAATGGTCG CGCAGAGCAT GCATCAGTTG AGCCCACGGC GCGACTTCGC ATTCGTCGCG
ATCAATTGCG GCGCGTTTCC CGAGGCGCTG CTGGAGAGCG AACTGTTCGG CTACGAGGAA
GGCGCGTTCA CCGGCGCGCG CAAGGGCGGC AAAGCGGGAT TGATCGAAGT CGCGCACCGC
GGCACGCTGT TTCTCGATGA AATCGGCGAA ATGCCGCTGT CGCTGCAAAG CCGGCTTCTG
CGCGTGCTGC AGGAACGTGA AGTCGTGCGG CTCGGATCGA CGGAGCCGAC ACGTGTGGAT
ATTCGCGTGG TCGCGGCGAC GCATCGCGCG TTGACCGAGG GCATCGAAGC AGGCAGCTTT
CGCGCGGACC TCTACTATCG GCTCAACATT CTGAGCATCG CGCTGCCGCC GCTGCGCGAA
CGGCCGACCG ACCTGCTGCC GCTCGCCGTC GAACTGCTGC TGCAAGCCGC CGCGCGCGAA
CCGAGGCTCG CGGCGCGCCT GCCGGACGCG GCCGCCGCCG AGCGCCTGCT CGCCACGCTC
GCCGAACCGC TCAAGCGCTA CGCGTGGCCC GGCAATGTGC GTGAATTGCA GAACGTGATC
GAACGGATCG CGGTCGAACT CGCCGATGTG GATGTGGATG CAGACGCAAA TGCGGACGTG
GGCGCAATAT CAGCAGGCGC CGCCGCACCC GTTCTCACCC GCGACATGTT GCGCACGGTC
GCGCCTGAAA TCGTCGAGCC GCACGCGCGC ACGAAAAAAG CCGCGCTAAC CCTGCGCGAA
CGCAGCCGTC ACGTGGAAGC CGACGAAATC CGCGCCGCGC TCGCCGCGCA CGACGGCGAC
CGCGACGCGG TCTGCGAGGC GCTCGGCATC AGCAAGACGA CGTTATGGCG GAAGCTGAGC
GCGACGCAGT AG
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| Protein sequence | MSTPPFEPVQ RPRIWAVSIS RLRDLFFDIA GEYVERADLR IVSHGFEDAV REIDAAGAGR
PDVVIAGGSN GAYLKTRVSV PVVLIGPTGF DVMHALARAR RDGAKVALVT HGNTPDEVRR
FVAAYALDVT FASYQSAQHA ESVVLDLRDR GIDVVVGPGM VTDLAANAGM GAVFLYSRAS
VRAAFDTALE VAQATRRETI RRQRLDNLLQ HLRDGVVALD AQGRVEAMNQ RLAGVLGLEA
AKAVGRVLLE LAPDLAGSLP DADGDALCTV RGVSYVVHRG PLASSSAAAG TVLTFQESRA
VERLDRTLRS RQRVQQFSAR YRLDDIVGAS DSIERVRALV RRYARSDATV LILGESGTGK
EMVAQSMHQL SPRRDFAFVA INCGAFPEAL LESELFGYEE GAFTGARKGG KAGLIEVAHR
GTLFLDEIGE MPLSLQSRLL RVLQEREVVR LGSTEPTRVD IRVVAATHRA LTEGIEAGSF
RADLYYRLNI LSIALPPLRE RPTDLLPLAV ELLLQAAARE PRLAARLPDA AAAERLLATL
AEPLKRYAWP GNVRELQNVI ERIAVELADV DVDADANADV GAISAGAAAP VLTRDMLRTV
APEIVEPHAR TKKAALTLRE RSRHVEADEI RAALAAHDGD RDAVCEALGI SKTTLWRKLS
ATQ
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