| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5934 |
|---|
| Symbol | |
|---|
| ID | 6278241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2157249 |
|---|
| End bp | 2158550 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642616997 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001889640 |
|---|
| Protein GI | 187920608 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.3101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CGACCCATCC GAGCCACGCC GTCGACGCGA ACCAGCCCGC CAGCCGCGGC
GCGATTGCCG CCGCGGTGAT CGGCAACTGG CTCGAGTTCT TCGACTTCAC CGTGTACGGC
TTTTTTGCCG TGATCATCGG CAAGCTGTAT TTCCCGTCGG CGGATCCGAC TACTTCGTTG
CTGCTGTCGG TGGCGACCTT CGCGGCGGGC TTCATCACGC GGCCGCTTGG CAGCGTGATG
CTCGGCGTGT ACGCGGACCG CAAGGGCCGC AAAGCCGCGC TCAATCTGAC CATCATGCTG
ATGGCGGTGA GCACCGGCCT GATCGCGATT GCGCCGACTT ATGCGCAGAT CGGTCTCGCC
GCGCCTTTGC TAATCGTCTT CGCGCGGCTC GTGCAAGGCT TCTCGCAAGG CGGAGAGTTC
GGCGCGGCCA CGTCCACGCT GCTCGAACAG GGCGGCGGCA CGCGGCGCGG TTTTCGCGCG
AGCTGGCAAC TCGCCACGCA AGGCGGCGCG GCGCTGATGG GCTCGGGTAT CGCGGCGGCG
CTGTCCGGCG CGTTGCCGAA AGACTCGCTG GAAAGCTGGG GCTGGCGCAT TCCGTTTTTG
CTCGGCGTGC TGATCGCGCC GGTCGGCATG TACCTGCGCC GCCGTCTGGC CGACGACGCG
GCCAGCGCGC ACAGCCACGC GATCGAGCGC GGCGTGCTGC ATGAACTCTT CACGCAGCAC
GTGCGCACGC TCGTCCTGAT CACGCTGACG GTGATGGGCG GCACGGTCTC GACCTACATC
CTGACCTTCT ATATGCCGAC CTACGCAATC CATACGCTCG GCCTGCCGAT GTCGCTGTCG
ATGCTGGTGG GTGTCGCCGC GGGCTTCGTG ATGCTGATCA CGTGCCCGCT GTTCGGCATG
CTGTCGGATC GCATCGGCAG CCGCAAGCGG CCGATCCTGT TCGGACGCGG CGTGCTGGTG
CTGCTGCTGT TCCCGGCCTT CATGCTGATC AATCGCTTTC CGCAGTTGCC CGTCATCATG
TCGCTGACCG CGCTGATGCT GCTGTTTTAT TCGATGGGTT CGGCGTCGGA ATTCGCCTTG
ATGTGCGAGT CGTTTCCGCG GCGCGTGCGC GCCACCGGCA TTTCGATCGC GTATGCGTTG
AGCGTGTGCG TGTTCGGCGG GACGGCGCAA CTCGTCGCCA CGTGGCTGAT CAAGCTGACC
GGCAGCAAGC TGGCGCCGGC CGGTTATGTG GCGGCGTGCG TCGTGGTGTC GTTGATCGCG
GTCTCGATGC TGAAGGAAAC CGCGGACAAG CCGATCGATT GA
|
|---|
| Protein sequence | MSTTTHPSHA VDANQPASRG AIAAAVIGNW LEFFDFTVYG FFAVIIGKLY FPSADPTTSL
LLSVATFAAG FITRPLGSVM LGVYADRKGR KAALNLTIML MAVSTGLIAI APTYAQIGLA
APLLIVFARL VQGFSQGGEF GAATSTLLEQ GGGTRRGFRA SWQLATQGGA ALMGSGIAAA
LSGALPKDSL ESWGWRIPFL LGVLIAPVGM YLRRRLADDA ASAHSHAIER GVLHELFTQH
VRTLVLITLT VMGGTVSTYI LTFYMPTYAI HTLGLPMSLS MLVGVAAGFV MLITCPLFGM
LSDRIGSRKR PILFGRGVLV LLLFPAFMLI NRFPQLPVIM SLTALMLLFY SMGSASEFAL
MCESFPRRVR ATGISIAYAL SVCVFGGTAQ LVATWLIKLT GSKLAPAGYV AACVVVSLIA
VSMLKETADK PID
|
|---|
| |